NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS40101.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40101.1 Public Mus musculus 7 Xylt1 23 108 98 CCDS HistoryNCBI Gene:233781Re-query CCDS DB by CCDS ID:40101.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40101.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032892.6 ENSMUSP00000032892.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032892.6Link to Ensembl Protein Viewer:ENSMUSP00000032892.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000032892Re-query CCDS DB by Protein ID:ENSMUSP00000032892
Original member Current member NCBI NM_175645.3 NP_783576.2 Accepted alive Link to Nucleotide Sequence:NM_175645.3Link to Protein Sequence:NP_783576.2Re-query CCDS DB by Nucleotide ID:NM_175645Re-query CCDS DB by Protein ID:NP_783576Link to BLAST:NP_783576.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_783576.2 953 Q811B1 953 97.1668% 0 27

Chromosomal Locations for CCDS 40101.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 117381179 117381520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 117475492 117475530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 117548584 117549097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 117591874 117592046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 117593537 117593739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 117621920 117622000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 117634600 117634816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 117637595 117637771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 117643478 117643740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 117650614 117650809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 117656412 117656745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 117667300 117667622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2862 nt):
ATGGTGGCGGCGCCGTGCGCCCGGAGGCTGGCGCGGCGCTCGCACTCGGCGCTGCTGGCGGCGCTCATGG
TGCTGCTGCTGCAGACGCTGGTGGTGTGGAATTTCAGCAGCCTGGACTCCGGGGCTGGAGAGCAGCGGCG
CGCGGGGGCAGCGGCGGGAGCAGCCGAGCAGCAGCAGCCCGCGGCCCCGCGCCGGGAGCGCAGGGACCTG
GCTGCCCATCTGCCCGCAGCCCGCGGAGGACCTGGAGGCCGAGCCGGCGGAGGAGGAGCACGGGGAGGCG
GCCCCGGAGGAGCCCGCGCACAGCAGCCTGCCAGCCGCGGGGCACTAGCCTCCCGGGCGAGGGATCCACA
ACCAAGTCCACTGATCACCCTAGAGACCCAGGATGGCTACTTCTCTCACCGTCCCAAAGAGAAAGTTCGG
ACCGACAGCAACAATGAGAACTCAGTCCCCAAGGACTTTGAGAATGTGGATAACAGCAACTTCGCCCCCA
GGACCCAGAAGCAGAAACACCAGCCAGAGCTGGCAAAGAAGCCCCCCAGCAGGCAGAAAGAGCATTTGCA
GAGAAAGCTGGATGCCCAGGACAAACGACAGGGCCAGTCAGTCCTGGGGAAAGGCCCCAAGGAGGTGCTG
CCTCCTCGGGAGAAAGCCACAGGCAACAGTAGCCAAGGGAAGGATCTCTCAAGACACAGCCATGCCAGGA
AGAGTGGTGGTGGTGGGTCCCCCGAAACCAAGTCTGACCAGGCCCCCAAGTGTGATATCTCTGGCAAGGA
GGCCATCTCAGCACTGACCCGCGCTAAGTCCAAGCATTGTCGCCAGGAGATTGCAGAAACCTACTGTCGC
CACAAGCTGGGGCTGCTGATGCCAGAGAAGGTGGCTCGATTCTGTCCCCTAGAAGGCAAAGCCAACAAGA
ATGTCCAGTGGGATGAGGATGCTGTGGAGTACATGCCTGCCAACCCAGTCAGAATCGCCTTTGTCCTGGT
GGTCCATGGCCGTGCCTCTCGACAGCTACAGCGCATGTTCAAGGCCATCTACCACAAAGACCATTTCTAC
TATATCCATGTGGATAAGCGTTCCAATTACCTGCATCGGCAAGTGCTCCAGTTCTCCAGGCAGTACGACA
ATGTCCGAGTCACCTCCTGGAGGATGGCCACCATTTGGGGTGGAGCCAGCCTCCTGTCCACCTACCTGCA
GAGCATGCGGGATCTACTAGAGATGACTGACTGGCCCTGGGACTTCTTCATCAACCTCAGTGCTGCTGAC
TACCCCATCAGGACAAATGACCAGCTGGTAGCATTTCTTTCCAGATATCGAGATATGAACTTCCTGAAGT
CACATGGCCGGGACAATGCAAGGTTCATCCGGAAGCAGGGCCTGGACCGCCTCTTCCTGGAGTGTGATAC
ACACATGTGGCGCCTGGGGGACCGGCGGATCCCAGAGGGCATTGCTGTGGATGGTGGTTCTGATTGGTTC
CTGCTAAACAGGAAGTTTGTAGAGTATGTGGCATTCTCCACAGATGACCTGGTGACCAAGATGAAGCAGT
TCTACTCTTACACCCTTCTCCCTGCTGAGTCCTTTTTCCACACGGTTCTAGAGAACAGCCCCCACTGTGA
CACCATGGTGGATAACAACCTGCGCATCACCAACTGGAACCGCAAGCTGGGCTGCAAGTGCCAGTACAAG
CATATCGTGGACTGGTGCGGCTGCTCTCCCAATGACTTCAAGCCTCAGGACTTCCATCGCTTCCAGCAGA
CAGCCCGGCCCACCTTCTTTGCCCGAAAGTTCGAAGCCATAGTGAACCAGGAGATCATTGGGCAGCTGGA
CTCTTACCTGTACGGGAACTATCCTGCGGGCACCCCGGGCCTCCGCTCCTACTGGGAGAATGTCTACGAT
GAACCAGATGGCATCCACACCCTCAGCGATGTAGCCCTCACCCTGTACCATTCCTTCATCCGTCTGGGTC
TTCGAAGAGCTGAGTCATCCCTACACACGGATGGGGAGAACAGCTGCAGGTACTACCCAATGGGCCACCC
AGCTTCTGTCCATCTCTACTTCCTTGCTGACCGATTCCAGGGCTTTCTGATCAAGCATCACGTGACCAAC
CTTGCTGTGAGCAAACTGGAGACACTGGAGACATGGATGATGCCAAAGAAAGTCTTCAAGGTCGCAAGTC
CCCCCAGTGACTTTGGAAGGCTTCAGTTTTCTGAGGTTGGCACTGACTGGGATGCCAAGGAGAGGCTGTT
CCGGAACTTTGGTGGTCTTTTGGGGCCCATGGATGAGCCGGTGGGGATGCAGAAATGGGGAAAGGGGCCC
AATGTGACCGTGACTGTTATTTGGGTGGATCCTGTCAACGTCATTGCAGCCACCTATGATATCCTGATTG
AGTCCACTGCGGAATTCACACACTACAAGCCCCCTTTGAATCTGCCTCTGAGGCCTGGGGTCTGGACAGT
GAAGATTCTCCATCACTGGGTGCCAGTGGCAGAGACCAAATTCCTTGTGGCACCTTTGACCTTTTCCAAC
AAGCAGCCCATCAAACCAGAGGAGGCTTTGAAGCTGCACAATGGGCCACCTCGCAGTGCCTACATGGAGC
AGAGTTTCCAGAGCCTGAACCCAGTCCTCAGCCTGCACATCAATCCTGCCCAAGTCGAACAGGCCCGGAA
GAATGCAGCCTTCACCGGGACAGCGCTAGAAGCCTGGCTGGACTCGCTGGTGGGTGGGACTTGGACTGCC
ATGGACATCTGCACCACAGGCCCCACCGCCTGCCCAGTCATGCAGACCTGCAGCCAAACAGCCTGGAGTT
CCTTCAGCCCTGATCCCAAGTCAGAGCTGGGTGCAGTCAAACCTGACGGACGGCTCAGGTAG

Translation (953 aa):
MVAAPCARRLARRSHSALLAALMVLLLQTLVVWNFSSLDSGAGEQRRAGAAAGAAEQQQPAAPRRERRDL
AAHLPAARGGPGGRAGGGGARGGGPGGARAQQPASRGALASRARDPQPSPLITLETQDGYFSHRPKEKVR
TDSNNENSVPKDFENVDNSNFAPRTQKQKHQPELAKKPPSRQKEHLQRKLDAQDKRQGQSVLGKGPKEVL
PPREKATGNSSQGKDLSRHSHARKSGGGGSPETKSDQAPKCDISGKEAISALTRAKSKHCRQEIAETYCR
HKLGLLMPEKVARFCPLEGKANKNVQWDEDAVEYMPANPVRIAFVLVVHGRASRQLQRMFKAIYHKDHFY
YIHVDKRSNYLHRQVLQFSRQYDNVRVTSWRMATIWGGASLLSTYLQSMRDLLEMTDWPWDFFINLSAAD
YPIRTNDQLVAFLSRYRDMNFLKSHGRDNARFIRKQGLDRLFLECDTHMWRLGDRRIPEGIAVDGGSDWF
LLNRKFVEYVAFSTDDLVTKMKQFYSYTLLPAESFFHTVLENSPHCDTMVDNNLRITNWNRKLGCKCQYK
HIVDWCGCSPNDFKPQDFHRFQQTARPTFFARKFEAIVNQEIIGQLDSYLYGNYPAGTPGLRSYWENVYD
EPDGIHTLSDVALTLYHSFIRLGLRRAESSLHTDGENSCRYYPMGHPASVHLYFLADRFQGFLIKHHVTN
LAVSKLETLETWMMPKKVFKVASPPSDFGRLQFSEVGTDWDAKERLFRNFGGLLGPMDEPVGMQKWGKGP
NVTVTVIWVDPVNVIAATYDILIESTAEFTHYKPPLNLPLRPGVWTVKILHHWVPVAETKFLVAPLTFSN
KQPIKPEEALKLHNGPPRSAYMEQSFQSLNPVLSLHINPAQVEQARKNAAFTGTALEAWLDSLVGGTWTA
MDICTTGPTACPVMQTCSQTAWSSFSPDPKSELGAVKPDGRLR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH