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Report for CCDS15048.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15048.1 Public Mus musculus 1 Ctdsp1 23 108 98 CCDS HistoryNCBI Gene:227292Re-query CCDS DB by CCDS ID:15048.1Re-query CCDS DB by GeneID:227292See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15048.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027367.13 ENSMUSP00000027367.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027367.13Link to Ensembl Protein Viewer:ENSMUSP00000027367.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000027367Re-query CCDS DB by Protein ID:ENSMUSP00000027367
Original member NCBI NM_153088.2 NP_694728.1 Updated not alive Link to Nucleotide Sequence:NM_153088.2Link to Protein Sequence:NP_694728.1Re-query CCDS DB by Nucleotide ID:NM_153088Re-query CCDS DB by Protein ID:NP_694728
Current member NCBI NM_153088.3 NP_694728.1 Accepted alive Link to Nucleotide Sequence:NM_153088.3Link to Protein Sequence:NP_694728.1Re-query CCDS DB by Nucleotide ID:NM_153088Re-query CCDS DB by Protein ID:NP_694728Link to BLAST:NP_694728.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_694728.1 261 P58466 261 100% 0 0

Chromosomal Locations for CCDS 15048.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 74391898 74391964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74393278 74393426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74393797 74393901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74394019 74394075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74394640 74394732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74394837 74395022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74395456 74395584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (786 nt):
ATGGACAGCTCGGCCGTCATTACTCAGATCAGCAAGGAGGAGGCGCGGGGCCCGCTGCGGGGCAAAGGTG
ACCAGAAGTCAGCAGTTTCCCAGAAGCCCCGGAGTCGGGGCATCCTCCACTCCCTCTTCTGCTGTGTCTG
CCGGGATGATGGGGAGCCCCTACCTGCCCACAGTGGGGCTCCCCTGCTGGTGGAGGAAAATGGCGCCATC
CCTAAGCACACCCCAGTCCAGTACCTGCTTCCCGAGGCCAAGGCCCAGGACTCAGACAAGATCTGCGTCG
TCATCGACCTGGACGAGACCCTGGTGCACAGCTCCTTCAAGCCAGTGAACAATGCGGACTTCATCATCCC
GGTGGAGATAGATGGAGTGGTCCACCAGGTCTATGTGCTGAAGCGGCCCCACGTAGATGAGTTCCTACAG
CGAATGGGCGAGCTCTTTGAATGTGTGCTGTTCACTGCCAGCCTTGCCAAGTACGCAGACCCTGTAGCTG
ATCTGCTGGACAAGTGGGGAGCCTTCCGTGCCAGGCTGTTTCGAGAGTCGTGTGTCTTCCACCGGGGGAA
CTACGTAAAGGACCTGAGCAGGCTGGGCCGAGACCTGCGGCGAGTGCTCATTCTAGACAACTCACCCGCC
TCCTATGTCTTCCATCCAGACAATGCCGTACCAGTGGCCTCGTGGTTTGACAACATGAGTGACACTGAGC
TACACGATCTCTTACCCTTCTTTGAGCAACTCAGCCGCGTGGACGACGTATACTCAGTGCTCAGACAGCC
TAGGCCCGGGAGCTAG

Translation (261 aa):
MDSSAVITQISKEEARGPLRGKGDQKSAVSQKPRSRGILHSLFCCVCRDDGEPLPAHSGAPLLVEENGAI
PKHTPVQYLLPEAKAQDSDKICVVIDLDETLVHSSFKPVNNADFIIPVEIDGVVHQVYVLKRPHVDEFLQ
RMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPA
SYVFHPDNAVPVASWFDNMSDTELHDLLPFFEQLSRVDDVYSVLRQPRPGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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