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Report for CCDS39970.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39970.1 Public Mus musculus 7 Luzp2 23 108 98 CCDS HistoryNCBI Gene:233271Re-query CCDS DB by CCDS ID:39970.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39970.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000082373.7 ENSMUSP00000080979.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000082373.7Link to Ensembl Protein Viewer:ENSMUSP00000080979.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000082373Re-query CCDS DB by Protein ID:ENSMUSP00000080979
Original member Current member NCBI NM_178705.5 NP_848820.4 Accepted alive Link to Nucleotide Sequence:NM_178705.5Link to Protein Sequence:NP_848820.4Re-query CCDS DB by Nucleotide ID:NM_178705Re-query CCDS DB by Protein ID:NP_848820Link to BLAST:NP_848820.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848820.4 345 Q8BGY3 345 100% 0 0

Chromosomal Locations for CCDS 39970.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 54835959 54836020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 55052753 55052870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 55058046 55058116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 55063269 55063350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 55075026 55075088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 55167200 55167262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 55172196 55172258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 55206687 55206761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 55211722 55211886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 55249398 55249490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 55264280 55264357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 55265262 55265366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1038 nt):
ATGAAATTCAACGCTGCACACTACCTGCTGCCCCTGCTGCCTGCACTCGTCCTCAGCACCAGACAGGACT
ATGAAGAGCTAGAGAAGCAGCTGAAGGAAGTCTTTAAGGAGCGTAGCACAGTCCTGCGGCAGCTGACAAA
GACATCCAGAGAACTGGATGGGATCAAAGTGAACCTTCAGTCTTTGAAAAATGATGAGCAATCTTCCAAA
ACCGATGTGCAGAAGCTTCTGGAGTTAGGCCAGAGACAAAGGGAAGAAATGAAGTCTCTCCAGGAAGCCC
TGCAGAATCAGCTTAAAGAGACATCTGAGAAAGCAGAGAAGCACCAGGCCACAATTAATTTTTTGAAGAC
TGAAGTGGAAAGAAAGAGCAAAATGATCCGTGACTTACAGAATGAGAATAAAAGTTTGAAAAACAAATTA
TTGTCAGGAAGCAAGCTGTGTGGGATTCATGCAGAAGAGTCTAAAAAAATCCAAGCCCAGCTGAAAGAGC
TCCGTTATGGGAAGAAAGATTTGTTATTTAAGGCCCAACAACTCACTGAACTGGAACAAAAGCTAGCTGT
AGCCAAAAATGAACTTGAGAAAGCAGCTCTTGACAGGGAATCACAGATGAAAGCAATGAAAGAGACCGTA
CAACTCTGCTTGTCATCAGTTTTCCGTGATCAGCCTCCTCCTTTGAGTCTCATGCCATCAAATCCAACCC
AGATGTTACATCCACCCAGGACTGTTGCTTCCAGGATTCCAGAAGCCAGGACTAAAAGCAAGCCACAACC
AAGTTCTCCAGGACATCATGACAGCTCTCAAGTTCAAGCAACAAAAGAAGAGAGTAGGAGACCCTCTGTG
TGTGGTCCTCAAGATGAGGGTAGTTCCTGTTTGGTGAAGCATGAGGAGGGTCCCCAAAGTAACAGCACTG
CAGAATCAGAGCTCACAACACAGAAATTACAAATGCCTATTTGTTCTGAATGTGAGGAGAAAAAAGGCCC
AGAAAACCCATCAGCCAGTTTCGATGGGACTCCAGCGAGAGAAGAAAAGCTACTGTAA

Translation (345 aa):
MKFNAAHYLLPLLPALVLSTRQDYEELEKQLKEVFKERSTVLRQLTKTSRELDGIKVNLQSLKNDEQSSK
TDVQKLLELGQRQREEMKSLQEALQNQLKETSEKAEKHQATINFLKTEVERKSKMIRDLQNENKSLKNKL
LSGSKLCGIHAEESKKIQAQLKELRYGKKDLLFKAQQLTELEQKLAVAKNELEKAALDRESQMKAMKETV
QLCLSSVFRDQPPPLSLMPSNPTQMLHPPRTVASRIPEARTKSKPQPSSPGHHDSSQVQATKEESRRPSV
CGPQDEGSSCLVKHEEGPQSNSTAESELTTQKLQMPICSECEEKKGPENPSASFDGTPAREEKLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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