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Report for CCDS39944.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39944.1 Public Mus musculus 7 Tbc1d17 23 108 98 CCDS HistoryNCBI Gene:233204Re-query CCDS DB by CCDS ID:39944.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39944.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047085.15 ENSMUSP00000048260.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047085.15Link to Ensembl Protein Viewer:ENSMUSP00000048260.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000047085Re-query CCDS DB by Protein ID:ENSMUSP00000048260
Original member NCBI NM_001042655.1 NP_001036120.1 Updated not alive Link to Nucleotide Sequence:NM_001042655.1Link to Protein Sequence:NP_001036120.1Re-query CCDS DB by Nucleotide ID:NM_001042655Re-query CCDS DB by Protein ID:NP_001036120
Current member NCBI NM_001042655.2 NP_001036120.1 Accepted alive Link to Nucleotide Sequence:NM_001042655.2Link to Protein Sequence:NP_001036120.1Re-query CCDS DB by Nucleotide ID:NM_001042655Re-query CCDS DB by Protein ID:NP_001036120Link to BLAST:NP_001036120.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001036120.1 645 Q8BYH7 645 100% 0 0

Chromosomal Locations for CCDS 39944.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 44841229 44841420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44841543 44841629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44841983 44842099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44842203 44842300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44842621 44842720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44842816 44842916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44842995 44843111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44843432 44843526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44844084 44844187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44844271 44844399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44845012 44845173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44845257 44845368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44845875 44846082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44846761 44846884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44848270 44848341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44848436 44848534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44848849 44848869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1938 nt):
ATGGAAGGATCCAGCTACAGGGTGGTGTTTGAAAAGGGAGGCGTGTACCTGCACACCAGCGCCCGGAAAC
ACCAGGATCCAGACTCGCTCATCGCCGGCGTCATACGAGTGGTGGAAAAGGACAGCGACGTCTTTCTGCA
CTGGGCTCCGGTGGAGGAGGCTGGAGACCCAACCCAGATTCTCTTCAAGAAGGACCCGAGTCGGGGTGAG
CCCAGCACCTCAGAGGAGGAACCTACCTTTGACCCAGGCTATGAACCTGACTGGGCTGTCATTAGCACGG
TGCGGCCACAGCCCCACCTGGCAGAGCCCAGGAAAGGTGCAGAGCCCAGTTCCTCCCGGAGCTCCTGGGC
CTTCTCCGTGAGCCTGGGGGAGCTCAAGTCCATCCGCAGATCCAAGCCAGGCCTCAGCTGGGCCTACCTG
GTCCTGGTGACCCAGGCTGGAGGCTCCCTGCCTGCCTTACACTTTCACAGAGGGGGTACCCGAGCCCTGC
TCCGAGTCCTTAGCCGATACCTGCTGTTGGCCAGCTCTCCACAGGACTCCCGCCTCTACTTGGTCTTCCC
CCAGGACCCCTCTGCCCTGTCCGACTCCTTCCACCACCTGCAGCTCTTTGACCAGGACAGCTCCAATGTG
GTGTCTCGTTTCCTTCAGGACCCCTACTCCACCACCTTCAGTAGCTTCTCTCGAGTGACCAACTTCTTCC
GGGGAGCCCTACAGCCGCACCCTGAGGGCGCCTCCTCCCCTAACCTACCCCCGCTGCCAGATGATGAACC
AGAGCCTGGCTTTGAGGTCATTTCTTGCGTGGAGCTGGGGCAGCGTCCCACAGTGGAGCGTGCTCCTCCA
GTCACAGAGGAAGAGTGGAACCGCTACGTGGGCCCCGAGGGTCGCCTGCAGAATGTCCCTGAGTTGAAAA
ACCGGATCTTCTCAGGCGGTCTCAGCCCTGGCCTACGTCGAGAGGCTTGGAAGTTCCTTCTGGGGTACCT
TAGCTGGGAGAGCTCAGCTGAAGAGCACAAGGCGCATGTGCGGAAGAAAACGGATGAGTACTTCCGAATG
AAGCTGCAGTGGAAGTCTGTGAGTGCTGAGCAGGAGCGGAGGAACTCACTGCTGCATGGATACCGAAGCC
TCATTGAGAGAGATGTAAGCCGCACGGACAGGACTAACAAGTTCTATGAAGGCCCTGAGAACCCTGGGCT
GAGCCTGCTCCATGATATCCTTCTTACCTACTGCATGTACCACTTCGACTTGGGCTACGTTCAGGGTATG
AGTGACCTCCTGTCCCCGATCCTCTTCGTTGTTCAGAACGAAGTAGATGCCTTCTGGTGTTTCTGCGGCT
TCATGGAACTTGTGCATGGGAACTTTGAAGAGAGTCAGGAGACTATGAAGCGGCAGCTTGGGCAGCTCCT
GCTGCTTCTGCGGGTGCTGGATCAGCCACTCTGTGATTTCCTGGATTCTCAGGACTCGGGCTCGCTGTGC
TTCTGTTTCCGGTGGCTGCTCATCTGGTTCAAGAGGGAATTCCCCTTTCCTGATGTCCTCCGGCTGTGGG
AGGTGCTGTGGACAGGGCTTCCTGGCCCCAATTTGCACCTGCTGGTGGCCTGTGCCATCTTGGATATGGA
ACGGGACACCCTGATGCTGTCTGGCTTTGGCTCCAATGAGATCCTTAAGCACATCAATGAACTGACCATG
AAGCTGAGTGTGGAGGATGTGCTGACACGGGCAGAGGCTCTGTACAGGCAGCTGACGGCCTGCCCAGAGC
TGCCACACAATGTGCAGGAGATCCTGGGGCTGGCACAGCCAGAAGAGCCTAGTAGCCCATCTCCTCCGGT
ATCTCCGATGCCCTTGTCACCTACTCGGGCCCCGTTGCCCCCGCCGCTGCCTGAGGAAGTGATCCCGCAG
CCTGACAGCAGTCTTGAGATTCTGCCTGAGGACGAGGATGGCGCCTGA

Translation (645 aa):
MEGSSYRVVFEKGGVYLHTSARKHQDPDSLIAGVIRVVEKDSDVFLHWAPVEEAGDPTQILFKKDPSRGE
PSTSEEEPTFDPGYEPDWAVISTVRPQPHLAEPRKGAEPSSSRSSWAFSVSLGELKSIRRSKPGLSWAYL
VLVTQAGGSLPALHFHRGGTRALLRVLSRYLLLASSPQDSRLYLVFPQDPSALSDSFHHLQLFDQDSSNV
VSRFLQDPYSTTFSSFSRVTNFFRGALQPHPEGASSPNLPPLPDDEPEPGFEVISCVELGQRPTVERAPP
VTEEEWNRYVGPEGRLQNVPELKNRIFSGGLSPGLRREAWKFLLGYLSWESSAEEHKAHVRKKTDEYFRM
KLQWKSVSAEQERRNSLLHGYRSLIERDVSRTDRTNKFYEGPENPGLSLLHDILLTYCMYHFDLGYVQGM
SDLLSPILFVVQNEVDAFWCFCGFMELVHGNFEESQETMKRQLGQLLLLLRVLDQPLCDFLDSQDSGSLC
FCFRWLLIWFKREFPFPDVLRLWEVLWTGLPGPNLHLLVACAILDMERDTLMLSGFGSNEILKHINELTM
KLSVEDVLTRAEALYRQLTACPELPHNVQEILGLAQPEEPSSPSPPVSPMPLSPTRAPLPPPLPEEVIPQ
PDSSLEILPEDEDGA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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