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Report for CCDS52175.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52175.1 Public Mus musculus 7 Zfp420 23 108 98 CCDS HistoryNCBI Gene:233058Re-query CCDS DB by CCDS ID:52175.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52175.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000057652.6 ENSMUSP00000056077.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057652.6Link to Ensembl Protein Viewer:ENSMUSP00000056077.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000057652Re-query CCDS DB by Protein ID:ENSMUSP00000056077
Original member Current member EBI ENSMUST00000074876.12 ENSMUSP00000074417.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074876.12Link to Ensembl Protein Viewer:ENSMUSP00000074417.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000074876Re-query CCDS DB by Protein ID:ENSMUSP00000074417
Original member Current member NCBI NM_001364618.1 NP_001351547.1 Accepted alive Link to Nucleotide Sequence:NM_001364618.1Link to Protein Sequence:NP_001351547.1Re-query CCDS DB by Nucleotide ID:NM_001364618Re-query CCDS DB by Protein ID:NP_001351547Link to BLAST:NP_001351547.1
Original member Current member NCBI NM_001364619.1 NP_001351548.1 Accepted alive Link to Nucleotide Sequence:NM_001364619.1Link to Protein Sequence:NP_001351548.1Re-query CCDS DB by Nucleotide ID:NM_001364619Re-query CCDS DB by Protein ID:NP_001351548Link to BLAST:NP_001351548.1
Original member Current member NCBI NM_172740.2 NP_766328.2 Accepted alive Link to Nucleotide Sequence:NM_172740.2Link to Protein Sequence:NP_766328.2Re-query CCDS DB by Nucleotide ID:NM_172740Re-query CCDS DB by Protein ID:NP_766328Link to BLAST:NP_766328.2

Chromosomal Locations for CCDS 52175.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 29874357 29876093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1737 nt):
ATGGTAACACATGACACAATGTCCGTTTTCTGCCCAGGCACGCGCCTACCTCAGCATCCACGGGGTTACT
CTACAGAGAAGCCCTATAAATGTGAGGAGTGTGGCAAAGCCTTCAGGCGAGCCTCACACCTGTCCCAGCA
TCAGAGTATTCACACTGGTGAGAAACCCTATGAATGTAAGCAGTGTGGGAAGGCCTTTAGTCGTGATTCC
CAGCTAAGTCTTCATCAGAGACTTCACACCGGTGAGAAACCCTACACATGCAAGGAATGTGGAAAGGCTT
TCACTCAAAGCTCACAACTTATTTTGCACCATAGAATTCATACGGGTGAGAAACCATACAAGTGTGAAGC
CTGTGGGAAGGCCTTTATTCGAAGCTCACAACTCAGCCGCCATCAAAAGGTCCACACTGGAGAGAAACCC
TTTGAATGTAAAGAGTGTGGGAAGGCCTTCACCCAGAACTCACAACTTACTCTGCACCAGAGACTGCACA
CTGGTGAGAAGCTCTACGACTGTAAGGAGTGTAGGAAGGTCTTTACTCAGCTCTCGCAGCTTATTCTCCA
TAGAAGAATCCACACTGGCGAGAAACCCTATGAATGCAATGAGTGTGGGAAAGCTTTCATTTGTGGCTCA
CAGCTCTCGCAGCACCGGAAAATCCACAATGGAGAAAAGCCATATGAATGTAAGGAGTGTGGGAAGGCTT
TTATTCGAGGCTCACTACTTATGCAACATCAAAGGATTCACACTGGTGAAAAACCCTATAAATGTGACGA
GTGTGGAAAGGCTTTTATCCGTGGTTCCCAACTCACTCAACATCAGAGGGTTCATACTAACGAAAAGCCT
TACGAATGTAAAGAATGTGGAAAGACCTTCAGTCATGGCTCACAACTAACTCAACATCAGAGAATCCATA
CTGGTGAGAAGCCCTATCAATGTAAGGAGTGTGGGAAAGCCTTTAATCGCGGGTCACTCCTTACTCGACA
TCAGAGGATTCACACCGGTGAAAAACCCTACAAATGTAAAGAATGTGGAAAAAATTTTAGCCGGGGCTCA
GAACTTACTCAGCATGAGAGAATCCACACGGGTGAGAAGCCCTATGAGTGTAAGGAATGTGGGAAGTCCT
TTATCCGTGGCTCCCAGCTCACTCAGCATCAAAGAATCCACACAGGTGAAAAACCGTATGAGTGTAAAGA
ATGCCGAATGGCCTTTACCCAGAGTTCACATCTTTCCCAGCATCAGAGACTTCATACCGGTGAGAAACCC
TACGTGTGTAGCGAATGTGGGAAGGCCTTTGCACGTGGATTGTTGCTCATACAGCATCAGAGAATTCATA
CTGGCGAGAAGCCGTATCAGTGTAGGGAATGTGGGAAGGCTTTTATCCGCAGTTCACAGCTCACTCAACA
TCAGCGAACTCACACTGGAGAGAAACCTTATGAATGTAGGGAATGTGGGAAGGCCTTTGGTCATGGCTCT
CAACTTACTCTGCATCAGAGGGTCCACACAGGTGAGAAGCCCTATGAATGTAAGGAGTGTAGAAAGGCCT
TCACTCAGAGTTCACATCTTTCTCGGCACCAACGAGTTCATACTGGCGAGAAACCGTATCAGTGTAAAGA
ATGTGAAAAGGCCTTTACACGTGAGTCTCAACTAATGCGACATCAGAGAATTCATATCCGTGGCAAATCT
TTGGACTGTAAGGAATGCCGAATAGACTTTAATCATCATTCGCAAATTTTTATATGA

Translation (578 aa):
MVTHDTMSVFCPGTRLPQHPRGYSTEKPYKCEECGKAFRRASHLSQHQSIHTGEKPYECKQCGKAFSRDS
QLSLHQRLHTGEKPYTCKECGKAFTQSSQLILHHRIHTGEKPYKCEACGKAFIRSSQLSRHQKVHTGEKP
FECKECGKAFTQNSQLTLHQRLHTGEKLYDCKECRKVFTQLSQLILHRRIHTGEKPYECNECGKAFICGS
QLSQHRKIHNGEKPYECKECGKAFIRGSLLMQHQRIHTGEKPYKCDECGKAFIRGSQLTQHQRVHTNEKP
YECKECGKTFSHGSQLTQHQRIHTGEKPYQCKECGKAFNRGSLLTRHQRIHTGEKPYKCKECGKNFSRGS
ELTQHERIHTGEKPYECKECGKSFIRGSQLTQHQRIHTGEKPYECKECRMAFTQSSHLSQHQRLHTGEKP
YVCSECGKAFARGLLLIQHQRIHTGEKPYQCRECGKAFIRSSQLTQHQRTHTGEKPYECRECGKAFGHGS
QLTLHQRVHTGEKPYECKECRKAFTQSSHLSRHQRVHTGEKPYQCKECEKAFTRESQLMRHQRIHIRGKS
LDCKECRIDFNHHSQIFI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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