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Report for CCDS20903.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20903.1 Public Mus musculus 7 Mark4 23 108 98 CCDS HistoryNCBI Gene:232944Re-query CCDS DB by CCDS ID:20903.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20903.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000085715.6 ENSMUSP00000082862.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000085715.6Link to Ensembl Protein Viewer:ENSMUSP00000082862.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000085715Re-query CCDS DB by Protein ID:ENSMUSP00000082862
Original member Current member NCBI NM_172279.2 NP_758483.1 Accepted alive Link to Nucleotide Sequence:NM_172279.2Link to Protein Sequence:NP_758483.1Re-query CCDS DB by Nucleotide ID:NM_172279Re-query CCDS DB by Protein ID:NP_758483Link to BLAST:NP_758483.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_758483.1 752 Q8CIP4-1 752 100% 0 0

Chromosomal Locations for CCDS 20903.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 19426075 19426411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19428074 19428118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19429326 19429604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19431769 19431872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19433319 19433536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19434557 19434716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19434812 19434921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19436938 19437037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19437399 19437518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19443117 19443353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19445109 19445165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19447181 19447251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19447682 19447747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19448426 19448474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19448605 19448658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19451556 19451756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19458444 19458494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2259 nt):
ATGTCTTCGAGGACGGCGCTGGCCCCGGGCAACGATCGAAACTCGGACACGCATGGCACATTGGGCAGTG
GACGATCTTCGGACAAAGGGCCGTCCTGGTCCAGCCGTTCCCTGGGTGCCCGTTGCCGGAACTCTATCGC
TTCCTGCCCTGAGGAACAACCCCATGTGGGCAACTATAGGCTGCTAAGGACCATCGGGAAGGGCAACTTC
GCCAAAGTCAAGCTGGCTCGGCATATCCTCACGGGCCGGGAGGTCGCTATTAAGATCATTGATAAGACCC
AGCTGAACCCCAGTAGCTTGCAGAAGCTGTTCAGAGAAGTCCGAATTATGAAGGGACTCAACCACCCCAA
CATCGTGAAGCTTTTTGAGGTGATAGAGACGGAGAAGACGCTATACCTGGTGATGGAATACGCTAGCGCA
GGAGAAGTGTTTGACTACCTCGTGTCGCACGGCCGCATGAAGGAGAAGGAGGCTCGAGCCAAGTTCCGGC
AGATCGTGTCAGCCGTGCACTACTGTCATCAGAAGAACATTGTACACAGGGATCTAAAGGCTGAAAACCT
GTTGCTGGATGCCGAGGCCAACATCAAAATCGCCGACTTCGGCTTCAGCAATGAGTTCACGCTGGGCTCC
AAGCTGGACACCTTCTGTGGGAGCCCCCCATACGCCGCCCCAGAGCTGTTCCAGGGCAAGAAGTATGATG
GGCCAGAGGTGGACATCTGGAGCCTGGGTGTCATCCTGTACACGCTGGTCAGCGGCTCCCTGCCCTTCGA
TGGGCACAACCTCAAGGAGCTGCGGGAGCGAGTCCTCAGAGGAAAGTACCGGGTCCCCTTCTACATGTCT
ACAGACTGCGAGAGCATTCTGCGGAGATTTCTGGTGCTGAACCCCGCAAAACGCTGTACTCTGGAGCAAA
TCATGAAAGACAAATGGATCAACATCGGCTATGAGGGTGAGGAGCTGAAGCCATACACGGAGCCTGAGGA
GGACTTCGGGGACACCAAGAGAATTGAGGTGATGGTGGGTATGGGCTACACACGGGAAGAAATCAAAGAG
GCCTTGACCAACCAGAAGTACAACGAGGTGACCGCCACCTACCTCCTGCTGGGCAGGAAGACTGAGGAGG
GTGGGGACCGGGGTGCCCCAGGGCTGGCCCTGGCACGGGTGCGGGCGCCCAGCGACACCACCAACGGGAC
AAGCTCCAGCAAAGGCAGCAGCCACAACAAAGGGCAACGGGCTTCTTCCTCCACCTACCACCGCCAGCGC
CGTCACAGTGACTTCTGTGGCCCGTCCCCTGCCCCGCTGCACCCGAAGCGCAGCCCAACCAGCACGGGAG
ACACGGAGCTCAAAGAAGAGCGGATGCCGGGTCGGAAAGCGAGCTGCAGTGCAGTGGGCAGTGGAAGTCG
AGGCTTGCCCCCCTCCAGCCCCATGGTCAGCAGTGCCCACAACCCCAATAAGGCAGAGATCCCTGAGCGG
CGGAAGGACAGCACTAGCACCCCTAACAACCTCCCCCCCAGCATGATGACCCGAAGAAACACCTATGTGT
GCACAGAGCGACCAGGATCTGAACGCCCGTCCTTGTTGCCAAATGGCAAAGAAAATAGCTCCGGTACCTC
GCGGGTGCCCCCTGCCTCGCCTTCCAGTCATAGCCTGGCTCCCCCGTCAGGCGAGCGGAGCCGCCTGGCT
CGGGGCTCCACCATCCGCAGCACCTTCCATGGGGGCCAGGTCCGAGACCGGCGGGCAGGGAGCGGGAGTG
GCGGGGGTGTGCAGAATGGACCCCCAGCCTCACCCACGCTTGCCCACGAGGCCGCACCCCTGCCCTCCGG
GCGGCCTCGCCCCACCACCAACCTCTTCACCAAGCTGACCTCCAAACTGACCCGAAGGGTCACAGACGAA
CCTGAGAGAATCGGGGGACCTGAGGTCACAAGTTGCCATCTACCTTGGGATAAAACGGAAACCGCCCCCA
GGCTGCTCCGATTCCCCTGGAGTGTGAAGCTGACCAGCTCGCGACCTCCTGAGGCCCTGATGGCTGCCCT
GCGACAGGCCACAGCGGCCGCCCGCTGCCGGTGCCGCCAGCCGCAGCCGTTCCTGCTGGCCTGCCTGCAC
GGGGGTGCGGGCGGGCCCGAGCCCCTGTCCCATTTCGAAGTGGAGGTGTGCCAGCTGCCCCGGCCCGGCC
TCAGGGGCGTCCTCTTCCGCCGTGTGGCGGGCACCGCCCTGGCCTTCCGCACCCTCGTCACCCGCATCTC
CAACGACCTCGAACTCTGA

Translation (752 aa):
MSSRTALAPGNDRNSDTHGTLGSGRSSDKGPSWSSRSLGARCRNSIASCPEEQPHVGNYRLLRTIGKGNF
AKVKLARHILTGREVAIKIIDKTQLNPSSLQKLFREVRIMKGLNHPNIVKLFEVIETEKTLYLVMEYASA
GEVFDYLVSHGRMKEKEARAKFRQIVSAVHYCHQKNIVHRDLKAENLLLDAEANIKIADFGFSNEFTLGS
KLDTFCGSPPYAAPELFQGKKYDGPEVDIWSLGVILYTLVSGSLPFDGHNLKELRERVLRGKYRVPFYMS
TDCESILRRFLVLNPAKRCTLEQIMKDKWINIGYEGEELKPYTEPEEDFGDTKRIEVMVGMGYTREEIKE
ALTNQKYNEVTATYLLLGRKTEEGGDRGAPGLALARVRAPSDTTNGTSSSKGSSHNKGQRASSSTYHRQR
RHSDFCGPSPAPLHPKRSPTSTGDTELKEERMPGRKASCSAVGSGSRGLPPSSPMVSSAHNPNKAEIPER
RKDSTSTPNNLPPSMMTRRNTYVCTERPGSERPSLLPNGKENSSGTSRVPPASPSSHSLAPPSGERSRLA
RGSTIRSTFHGGQVRDRRAGSGSGGGVQNGPPASPTLAHEAAPLPSGRPRPTTNLFTKLTSKLTRRVTDE
PERIGGPEVTSCHLPWDKTETAPRLLRFPWSVKLTSSRPPEALMAALRQATAAARCRCRQPQPFLLACLH
GGAGGPEPLSHFEVEVCQLPRPGLRGVLFRRVAGTALAFRTLVTRISNDLEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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