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Report for CCDS20261.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20261.1 Public Mus musculus 6 Eva1a 23 108 98 CCDS HistoryNCBI Gene:232146Re-query CCDS DB by CCDS ID:20261.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20261.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042974.14 ENSMUSP00000037422.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042974.14Link to Ensembl Protein Viewer:ENSMUSP00000037422.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000042974Re-query CCDS DB by Protein ID:ENSMUSP00000037422
Original member NCBI NM_145570.2 NP_663545.2 Updated not alive Link to Nucleotide Sequence:NM_145570.2Link to Protein Sequence:NP_663545.2Re-query CCDS DB by Nucleotide ID:NM_145570Re-query CCDS DB by Protein ID:NP_663545
Current member NCBI NM_145570.3 NP_663545.2 Accepted alive Link to Nucleotide Sequence:NM_145570.3Link to Protein Sequence:NP_663545.2Re-query CCDS DB by Nucleotide ID:NM_145570Re-query CCDS DB by Protein ID:NP_663545Link to BLAST:NP_663545.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663545.2 156 Q91WM6 156 100% 0 0

Chromosomal Locations for CCDS 20261.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 82071143 82071242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 82091794 82092164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (471 nt):
ATGAAGCTGCCCCTCAGCCCCAGCACGGAACCAGTGGCCACGGAGCCCTTGGGAATGGCTCTGCTCAGCA
GCATCCTGGCAGCCTGGTCTTATATCTCAGAAAACCCTGAGCGAGCCGCTCTGTACTTTGTCTCTGGAGT
GTGCATTGGCCTGTTCCTGACCTTGGCCGCCTTGGTGATGAGGATCTCCTGCCACACGGACTGCCGGCGA
GGTCCCCGGAGGAGGTGCTTGCAGGACCGCGAGTGCAGCGACAGCAGCGACAGCGAGGATGGTAGCGAGG
ACACAGCCTCTGACCTCTCGGTGCGCAGACACCGCCGCTTCGAGAGGACTTTGAATAAGAACGTGTTCAC
CTCTGCAGAGGAGCTGGAGCGCGCACAGCGCTTGGAGGAGCGCGAACGAATCATCAGGGAGATCTGGATG
AACGGGCAGCCTGAGGTGCCGGGCACCAGGAGCCTGAACCGATACTACTAG

Translation (156 aa):
MKLPLSPSTEPVATEPLGMALLSSILAAWSYISENPERAALYFVSGVCIGLFLTLAALVMRISCHTDCRR
GPRRRCLQDRECSDSSDSEDGSEDTASDLSVRRHRRFERTLNKNVFTSAEELERAQRLEERERIIREIWM
NGQPEVPGTRSLNRYY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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