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Report for CCDS42582.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42582.1 Public Homo sapiens 19 ZC3H4 24 110 108 CCDS HistoryNCBI Gene:23211Re-query CCDS DB by CCDS ID:42582.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42582.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000253048.10 ENSP00000253048.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000253048.10Link to Ensembl Protein Viewer:ENSP00000253048.4Re-query CCDS DB by Nucleotide ID:ENST00000253048Re-query CCDS DB by Protein ID:ENSP00000253048
Original member Current member NCBI NM_015168.2 NP_055983.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015168.2Link to Protein Sequence:NP_055983.1Re-query CCDS DB by Nucleotide ID:NM_015168Re-query CCDS DB by Protein ID:NP_055983Link to BLAST:NP_055983.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055983.1 1303 Q9UPT8 1303 100% 0 0

Chromosomal Locations for CCDS 42582.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 47066356 47067869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47069092 47069343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47071778 47072121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47072352 47072713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47081513 47081622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47082184 47082295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47084345 47084455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47085056 47085195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47085318 47085414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47086384 47086538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47089967 47090189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47093970 47094080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47094389 47094608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47112424 47112584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3912 nt):
ATGGAGGCCGCGCCCGGGACCCCCCCGCCGCCGCCATCAGAGTCGCCGCCGCCGCCATCGCCGCCGCCGC
CATCAACGCCTTCGCCTCCTCCGTGTTCCCCCGACGCCCGCCCGGCCACCCCGCACCTCCTCCACCACCG
CCTCCCGCTCCCTGACGACAGGGAAGATGGAGAGTTGGAAGAAGGTGAATTGGAAGATGATGGGGCAGAG
GAGACCCAGGATACCTCCGGAGGGCCTGAGAGAAGCCGGAAAGAAAAGGGGGAGAAGCATCACAGTGATT
CGGATGAGGAGAAGTCCCACAGGAGACTGAAGCGGAAACGGAAGAAAGAGCGGGAGAAAGAGAAAAGGAG
GTCGAAGAAGAGGAGGAAATCCAAGCACAAACGCCATGCTTCTTCTAGCGATGACTTCTCTGACTTCTCA
GATGACTCGGATTTCAGCCCCAGTGAGAAAGGTCACCGCAAGTACAGAGAGTACAGCCCCCCATATGCGC
CGTCCCACCAGCAGTACCCCCCATCGCATGCCACGCCCCTGCCCAAGAAGGCATACTCCAAGATGGACAG
CAAGAGTTATGGCATGTACGAGGACTACGAGAATGAGCAGTATGGGGAATATGAGGGCGACGAGGAGGAG
GACATGGGCAAGGAGGACTATGACGACTTCACCAAAGAGCTGAACCAGTACCGGCGTGCCAAGGAGGGCA
GCAGCCGCGGCCGAGGCAGCCGAGGCCGGGGCCGGGGCTACAGGGGCCGAGGAAGCCGTGGAGGATCGCG
AGGCCGCGGCATGGGCAGGGGCAGCCGAGGCAGGGGCAGAGGCTCTATGGGAGGAGACCACCCGGAGGAT
GAAGAGGATTTCTACGAGGAAGAGATGGACTATGGAGAGAGTGAGGAGCCAATGGGAGACGACGACTATG
ACGAGTACTCCAAGGAGCTGAACCAGTACCGCCGCTCCAAGGACAGCCGAGGCCGAGGGCTAAGTCGAGG
CCGTGGCAGGGGCTCCCGAGGTCGAGGGAAAGGAATGGGTCGGGGCCGAGGCCGAGGTGGCAGCCGAGGA
GGGATGAACAAGGGCGGAATGAACGATGACGAAGACTTCTATGACGAGGACATGGGCGACGGTGGTGGTG
GAAGCTACCGGAGTCGTGACCATGACAAGCCCCACCAGCAGTCGGACAAGAAAGGCAAAGTCATTTGCAA
GTACTTCGTGGAAGGGCGCTGCACCTGGGGAGACCACTGTAATTTTAGCCATGACATCGAACTCCCAAAG
AAGCGAGAACTGTGCAAGTTTTACATCACTGGATTTTGCGCCAGAGCTGAGAACTGCCCTTATATGCACG
GTGATTTCCCGTGTAAGCTGTACCACACCACTGGGAACTGCATCAATGGTGACGACTGCATGTTTTCCCA
CGACCCTCTGACCGAAGAGACGAGGGAGCTCTTGGATAAGATGTTGGCCGATGATGCAGAAGCAGGTGCC
GAGGATGAGAAGGAGGTGGAGGAACTGAAGAAGCAGGGCATCAACCCCCTGCCCAAACCGCCCCCTGGTG
TGGGCCTCCTGCCCACCCCTCCTCGGCCCCCTGGCCCGCAGGCTCCAACCTCTCCCAACGGCAGGCCCAT
GCAGGGTGGCCCCCCGCCCCCGCCCCCTCCCCCTCCCCCACCGCCCGGGCCCCCTCAGATGCCCATGCCG
GTGCATGAGCCACTGTCCCCGCAGCAGCTGCAGCAGCAGGACATGTACAACAAGAAGATCCCCTCCTTGT
TTGAGATCGTGGTGCGGCCCACGGGACAGCTGGCTGAGAAGCTGGGTGTGAGGTTCCCTGGACCCGGTGG
ACCCCCAGGGCCAATGGGCCCTGGGCCCAACATGGGACCCCCAGGGCCAATGGGCGGTCCAATGCATCCT
GACATGCACCCCGACATGCACCCGGACATGCACCCTGACATGCACGCAGACATGCACGCAGACATGCCGA
TGGGCCCTGGCATGAATCCTGGCCCACCCATGGGCCCTGGCGGCCCTCCAATGATGCCCTACGGCCCTGG
AGACTCCCCACATTCTGGAATGATGCCCCCTATCCCGCCAGCCCAGAACTTCTATGAAAACTTCTACCAG
CAGCAGGAGGGCATGGAGATGGAGCCCGGACTCCTGGGGGATGCAGAGGACTACGGGCACTACGAAGAGC
TGCCAGGGGAGCCTGGGGAGCACCTCTTCCCTGAGCACCCTCTGGAGCCCGACAGCTTCTCTGAGGGAGG
GCCCCCAGGCCGGCCGAAGCCAGGCGCCGGTGTCCCTGACTTCCTGCCCTCAGCCCAGAGGGCCCTGTAC
CTGAGGATCCAGCAGAAGCAGCAGGAGGAGGAGGAGAGAGCGAGGAGGCTGGCTGAGAGCAGCAAGCAGG
ACCGGGAGAATGAGGAAGGTGACACCGGAAACTGGTACTCAAGTGATGAGGATGAGGGTGGAAGCAGTGT
CACCTCCATCCTGAAGACCTTGAGGCAGCAGACGTCCAGCCGACCCCCGGCTTCAGTTGGGGAGCTGAGC
AGCAGTGGGCTGGGGGACCCCCGCCTCCAGAAGGGACACCCCACAGGAAGCCGGCTGGCTGACCCTCGCC
TCAGCCGGGACCCCAGACTCACCCGCCATGTGGAGGCTTCTGGCGGGTCTGGCCCAGGTGATTCGGGACC
CTCCGATCCTCGGCTGGCTCGCGCCCTGCCCACCTCCAAGCCCGAAGGCAGCCTTCATTCCAGCCCTGTG
GGCCCCAGCAGTTCCAAGGGGTCTGGGCCGCCCCCAACGGAGGAGGAGGAAGGGGAGCGGGCCCTGCGGG
AGAAGGCCGTGAACATTCCCCTGGACCCACTCCCCGGGCACCCTCTGCGGGACCCACGGTCACAGCTGCA
GCAGTTCAGCCACATCAAGAAGGACGTGACCCTGAGCAAGCCCAGCTTCGCCCGCACCGTGCTCTGGAAT
CCCGAGGACCTGATCCCCCTACCCATCCCCAAGCAGGACGCAGTGCCCCCCGTGCCCGCGGCCCTGCAAT
CCATGCCCACCCTGGACCCCCGGCTGCACCGCGCTGCCACGGCAGGGCCCCCCAACGCCCGGCAGCGCCC
GGGCGCCTCCACGGATTCCAGCACACAGGGCGCCAACCTCCCCGACTTTGAACTTCTGTCTCGCATCCTC
AAGACAGTCAATGCCACCGGCTCCTCGGCCGCCCCCGGTTCCAGCGACAAACCCAGTGACCCCCGGGTGC
GGAAGGCCCCCACCGACCCTCGGCTGCAGAAACCCACAGACTCTACGGCCTCCTCCCGGGCTGCCAAGCC
CGGCCCTGCTGAGGCGCCCTCTCCCACCGCCAGCCCGAGTGGGGATGCCTCCCCACCAGCCACCGCTCCC
TACGACCCCCGCGTGCTGGCGGCCGGTGGACTGGGCCAGGGCGGAGGGGGCGGGCAGAGCAGTGTGCTGA
GCGGTATCAGCCTCTACGACCCGAGGACTCCCAACGCGGGGGGCAAAGCCACAGAGCCGGCTGCTGACAC
GGGTGCCCAGCCCAAGGGTGCTGAGGGCAATGGCAAGAGCTCGGCCTCCAAGGCTAAGGAGCCCCCGTTC
GTCCGCAAGTCTGCCCTGGAACAGCCAGAGACAGGGAAGGCCGGTGCTGATGGGGGCACCCCCACGGACA
GATACAACAGCTACAACCGGCCCCGGCCCAAGGCTGCTGCAGCCCCCGCTGCCACCACCGCCACCCCACC
CCCCGAGGGTGCCCCACCCCAGCCCGGGGTGCACAACCTGCCCGTGCCCACCCTCTTCGGGACGGTGAAG
CAGACACCCAAGACGGGCTCAGGAAGCCCATTTGCTGGGAACAGTCCGGCCCGCGAGGGTGAGCAGGATG
CGGCATCCCTGAAGGATGTTTTTAAAGGCTTCGACCCCACGGCCTCCCCCTTTTGCCAGTAG

Translation (1303 aa):
MEAAPGTPPPPPSESPPPPSPPPPSTPSPPPCSPDARPATPHLLHHRLPLPDDREDGELEEGELEDDGAE
ETQDTSGGPERSRKEKGEKHHSDSDEEKSHRRLKRKRKKEREKEKRRSKKRRKSKHKRHASSSDDFSDFS
DDSDFSPSEKGHRKYREYSPPYAPSHQQYPPSHATPLPKKAYSKMDSKSYGMYEDYENEQYGEYEGDEEE
DMGKEDYDDFTKELNQYRRAKEGSSRGRGSRGRGRGYRGRGSRGGSRGRGMGRGSRGRGRGSMGGDHPED
EEDFYEEEMDYGESEEPMGDDDYDEYSKELNQYRRSKDSRGRGLSRGRGRGSRGRGKGMGRGRGRGGSRG
GMNKGGMNDDEDFYDEDMGDGGGGSYRSRDHDKPHQQSDKKGKVICKYFVEGRCTWGDHCNFSHDIELPK
KRELCKFYITGFCARAENCPYMHGDFPCKLYHTTGNCINGDDCMFSHDPLTEETRELLDKMLADDAEAGA
EDEKEVEELKKQGINPLPKPPPGVGLLPTPPRPPGPQAPTSPNGRPMQGGPPPPPPPPPPPPGPPQMPMP
VHEPLSPQQLQQQDMYNKKIPSLFEIVVRPTGQLAEKLGVRFPGPGGPPGPMGPGPNMGPPGPMGGPMHP
DMHPDMHPDMHPDMHADMHADMPMGPGMNPGPPMGPGGPPMMPYGPGDSPHSGMMPPIPPAQNFYENFYQ
QQEGMEMEPGLLGDAEDYGHYEELPGEPGEHLFPEHPLEPDSFSEGGPPGRPKPGAGVPDFLPSAQRALY
LRIQQKQQEEEERARRLAESSKQDRENEEGDTGNWYSSDEDEGGSSVTSILKTLRQQTSSRPPASVGELS
SSGLGDPRLQKGHPTGSRLADPRLSRDPRLTRHVEASGGSGPGDSGPSDPRLARALPTSKPEGSLHSSPV
GPSSSKGSGPPPTEEEEGERALREKAVNIPLDPLPGHPLRDPRSQLQQFSHIKKDVTLSKPSFARTVLWN
PEDLIPLPIPKQDAVPPVPAALQSMPTLDPRLHRAATAGPPNARQRPGASTDSSTQGANLPDFELLSRIL
KTVNATGSSAAPGSSDKPSDPRVRKAPTDPRLQKPTDSTASSRAAKPGPAEAPSPTASPSGDASPPATAP
YDPRVLAAGGLGQGGGGGQSSVLSGISLYDPRTPNAGGKATEPAADTGAQPKGAEGNGKSSASKAKEPPF
VRKSALEQPETGKAGADGGTPTDRYNSYNRPRPKAAAAPAATTATPPPEGAPPQPGVHNLPVPTLFGTVK
QTPKTGSGSPFAGNSPAREGEQDAASLKDVFKGFDPTASPFCQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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