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Report for CCDS51800.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51800.1 Public Mus musculus 6 Ccser1 23 108 98 CCDS HistoryNCBI Gene:232035Re-query CCDS DB by CCDS ID:51800.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51800.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045522.12 ENSMUSP00000040251.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045522.12Link to Ensembl Protein Viewer:ENSMUSP00000040251.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000045522Re-query CCDS DB by Protein ID:ENSMUSP00000040251
Original member Current member EBI ENSMUST00000126214.7 ENSMUSP00000122894.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000126214.7Link to Ensembl Protein Viewer:ENSMUSP00000122894.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000126214Re-query CCDS DB by Protein ID:ENSMUSP00000122894
Original member Current member NCBI NM_001164316.1 NP_001157788.1 Accepted alive Link to Nucleotide Sequence:NM_001164316.1Link to Protein Sequence:NP_001157788.1Re-query CCDS DB by Nucleotide ID:NM_001164316Re-query CCDS DB by Protein ID:NP_001157788Link to BLAST:NP_001157788.1
Original member Current member NCBI NM_183310.2 NP_899133.2 Accepted alive Link to Nucleotide Sequence:NM_183310.2Link to Protein Sequence:NP_899133.2Re-query CCDS DB by Nucleotide ID:NM_183310Re-query CCDS DB by Protein ID:NP_899133Link to BLAST:NP_899133.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157788.1 895 Q8C0C4-1 895 100% 0 0
NP_899133.2 895 Q8C0C4-1 895 100% 0 0

Chromosomal Locations for CCDS 51800.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 61310855 61312172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 61313654 61313835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 61373961 61374054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 61422957 61423077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 61570670 61570877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 61638439 61638513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 61718145 61718228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 61810631 61810708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 61956689 61956733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 62379785 62380267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2688 nt):
ATGGGGGACTCAGGATCAAGACGATGTACCCTGGTCTCCCGGTTGCCAATATTCAGGAAAAGTATTAACA
GAAGACATGATTCTCTGCCTTCTTCACCTTCCTCCAGCAACACCGCTGGTGTGCATAGCTCCTCCCCTTC
CAGCACTAACTCGAGCTCAGGGAGCACGGGAAAACGCAGGAGCATCTTCCGTGCTCCCTCTATCAGCTTC
CACCATAAGAAGGGCAGTGAACCTAAGCCAGAACCCACTGAGCAGAACCTTAGTATTTCCAATGGTGCTC
AACCCAGTCACAGCAATATGCAGAAACTAAGTTTGGAGGAACACGTCAAAACCAGGGGAAGACACTCTGT
GGGTTTCAGCAGTTCACGAAGTAAGAAGATAACAAGGTCTTTGACGGAAGATTTTGAAAGGGAAAAGGAG
CCTTCAACTAATAAGAATGTCTTTATAAACTGTCTAAGTTCTGGCAGAAGTGAAGGGGACGATTCTGGAT
TCACAGAAGAACAAAGTCGCCGTTCTATTAAACAGTCCACCAAGAAGCTGCTCCCCAAGTCCTTCTCATC
TCACTATAAGTTTTGTAAGTCGGTTCCTCAGAGCCAATCCACTTCATTGATACAGCAGCCTGAGTTCTCG
CTGGCAATTGCACAATACCAAGAGCAGGAAGCCGCCTTAGGGAGACCTTCCCCATCTTGCTCTGTGGATG
TAACAGAGCGCGCAGGAAGTTCCTTACAGTCGCCTCTGCTTTCTGCTGACCTGACCACAGCTCAGACCCC
TTCAGAATTTTTGGCCTTGACTGAAGATTCTTTGTCTGAGGCAGATGCCTTTCCTAAAAGTGGAAGCACG
GCATCACACTGTGACAATTTTGGCCACAATGATGCTACCTCTCAGCCCACTTCCAGTCTTACTGCTGTCT
CAAAGACAAAGATGGAATTTGTGGGGACTGCGCCCTGTGTGATGTCTCCAGGGAGGTACAGGCTAGAAGG
TCGGTGCAGCACTGAACTGCATTCTTCACCAGAGACCCCTGCTGGTAACCGGAGGGAAGTGTCACTACAA
AGCACTGAGCTCTCTGTTGGGAATGGGAGTGATCCAGAGACCCATTTACCGGCCCATCATCAAAGAGGAG
AGAGCCCCTTGGCACACGCTGGTGAACCAGCGCTGAGGACAGGCTCGCCCAGGACACTGGGCTCCTATGA
CCAGCACAAGGCATTGGCTGAACGCTTTAAAGGGGTCCACCCTGTCTCGGATTCAAGGGTAATCCCTTCC
TCTGGGGATCATGTTTTTAACAAAACGTCTTATGGATATGAAGCGAGTGCTGCCAAAGTTCTTGCCAGTA
GCCTCAGTCCATACCGAGAAGGAAGATATATAGAGCGGCGGCTGCGGTCCTCCTCTGAAGGGACAGCGGG
GAGCAGCAGAATGGTCTTAAAGCCGAAGGATGGGCATGTGGAAGCCAGCAGCTTGAGAAAGCACAGAACG
GGGTCCTCCTCTTCCAAAATGAACAGTCTGGACGTTTTAAATCATCTGGGATCCTGTGAACTGGATGAAG
ATGACTTAATGCTTGATTTAGAATTTTTAGAGGAACAGAATCTTCAACCCCCAGTTTGCCGGGAAGATTC
CTGCCACTCTGTAATGTCCTGTACAGCCGTTCTTCTCAGCCCAGTGGATCCAGGAAAAGAAGTGAATATG
CTAGAAGAACCAAAATGTCCTGAGCCTTCCAAACAGAACCTTTCCCTGAGAATAACAAAAGACACTGATC
AAGAGGCCCGGTGTTCCCATGTCAGCTGCATGCCCAACAGTCCCTCTGCAGATTGGCCCCAGCAGGGTGT
GGAGGAAAATGGAGGCATAGATTCTCTGCCATTCAGACTGATGCTCCAGGAGTGCACGGCAGTGAAGACG
CTGCTTCTGAAGATGAAGAGAGTGCTGCAAGAGAGTGATGTGAGCCCTTCCAGCAGTACCACCTCACTTC
CCATCAGCCCTCTGACTGAAGAGCCACTGCCTTTCAAGGATATAACAAGAGATGAATGCTCGATGCTGAG
GCTACAACTGAAGGACAGGGATGAGCTCATTTCTCAGCTTCAGGCAGAGCTGGAAAAGGTGCAGCATTTA
CAGAAGGCGTTTGCTTCAAGAGTAGATAAATCCACGCAGACTGAACTTCTAGGATGCGATGGTTTAAGCC
TGAAACGACTGGAGGCTGTACAAGGAGGGAGAGAGACTACACACCGAAATCGAACCATGAGTCAAAGTCA
CAGCACAAGGGACAGAAAAGCAATACATACTCCCACCGAGGACCGTTTTAGATATTCTACAGCTGACCAG
ACAAGTCCCTACAAGAATATCTGCCAACTCCCAGGTCTGTGTCTTAGCAATTTCTTGAAGGACAAGGAAT
TAGGAGGAGTTATGAAACACACAAGGGGGAACCACGAAGCTGTCACATCAGAAATGACTCAGAACTCAAG
GACAACTATGGGACAGAGCTTTCTGAAGGCAGCAGCTAAGCCAGAAGGGCTGCCCATGTTCTCAGAAAAA
CCAAAGGACCCAGCAGCTCTGTCCCGACAGCACTCCACCTTCACAGGCAGATTTGGACAGCCACCCAGAG
GACCTATCTCCTTACACACATACAGCAGGAAGAATGTTTTTCTCCACCACAATTTACATACAACAGAGTT
CCAGACTCTGGGCCAGCAGGATGGGTAG

Translation (895 aa):
MGDSGSRRCTLVSRLPIFRKSINRRHDSLPSSPSSSNTAGVHSSSPSSTNSSSGSTGKRRSIFRAPSISF
HHKKGSEPKPEPTEQNLSISNGAQPSHSNMQKLSLEEHVKTRGRHSVGFSSSRSKKITRSLTEDFEREKE
PSTNKNVFINCLSSGRSEGDDSGFTEEQSRRSIKQSTKKLLPKSFSSHYKFCKSVPQSQSTSLIQQPEFS
LAIAQYQEQEAALGRPSPSCSVDVTERAGSSLQSPLLSADLTTAQTPSEFLALTEDSLSEADAFPKSGST
ASHCDNFGHNDATSQPTSSLTAVSKTKMEFVGTAPCVMSPGRYRLEGRCSTELHSSPETPAGNRREVSLQ
STELSVGNGSDPETHLPAHHQRGESPLAHAGEPALRTGSPRTLGSYDQHKALAERFKGVHPVSDSRVIPS
SGDHVFNKTSYGYEASAAKVLASSLSPYREGRYIERRLRSSSEGTAGSSRMVLKPKDGHVEASSLRKHRT
GSSSSKMNSLDVLNHLGSCELDEDDLMLDLEFLEEQNLQPPVCREDSCHSVMSCTAVLLSPVDPGKEVNM
LEEPKCPEPSKQNLSLRITKDTDQEARCSHVSCMPNSPSADWPQQGVEENGGIDSLPFRLMLQECTAVKT
LLLKMKRVLQESDVSPSSSTTSLPISPLTEEPLPFKDITRDECSMLRLQLKDRDELISQLQAELEKVQHL
QKAFASRVDKSTQTELLGCDGLSLKRLEAVQGGRETTHRNRTMSQSHSTRDRKAIHTPTEDRFRYSTADQ
TSPYKNICQLPGLCLSNFLKDKELGGVMKHTRGNHEAVTSEMTQNSRTTMGQSFLKAAAKPEGLPMFSEK
PKDPAALSRQHSTFTGRFGQPPRGPISLHTYSRKNVFLHHNLHTTEFQTLGQQDG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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