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Report for CCDS19824.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19824.1 Public Mus musculus 5 Amz1 23 108 98 CCDS HistoryNCBI Gene:231842Re-query CCDS DB by CCDS ID:19824.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19824.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060918.10 ENSMUSP00000053110.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060918.10Link to Ensembl Protein Viewer:ENSMUSP00000053110.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000060918Re-query CCDS DB by Protein ID:ENSMUSP00000053110
Original member Current member EBI ENSMUST00000120630.2 ENSMUSP00000113911.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120630.2Link to Ensembl Protein Viewer:ENSMUSP00000113911.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000120630Re-query CCDS DB by Protein ID:ENSMUSP00000113911
Original member Current member NCBI NM_173405.2 NP_775581.1 Accepted alive Link to Nucleotide Sequence:NM_173405.2Link to Protein Sequence:NP_775581.1Re-query CCDS DB by Nucleotide ID:NM_173405Re-query CCDS DB by Protein ID:NP_775581Link to BLAST:NP_775581.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775581.1 502 Q8BVF9 502 100% 0 0

Chromosomal Locations for CCDS 19824.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 140741284 140741587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140744017 140744184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140748143 140748271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140748615 140748787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140749155 140749331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140751938 140752495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1509 nt):
ATGGTGCAGTGCAAACCACCCCAGGAGTTCAGCTTCGGGCCCCGGGCCCTGAAGGATGCCCTGATCTCCT
GTGACCTGGCCCTGAAGCAGATGTATACCTCAGCCTTTTCCCCGTCGGAGAGACTCTTCCTGTCTGAGGC
CTACAACCCTAACCGGACTCTCTTCAGCACACTGCTCATTCACTCAGCCTATGACTGGCTCCTGAGCCGC
CCTGAAGCCCCTGAGGATTTCGAGACCTTCCATGCTTCTTTGCAGCTCCGGAAGCAGAGCCTGGCCCGGA
AACACATTTACCTGCAGCCCATAGATCTGAGCGAGGGGCTGGCGGGATGCCCCCTGCTGGACCACCTTCG
GAGCTGCGCCGAGGCTTTCTTCCTGGGCCTTCGCGTCAAATGCCTGCCCTCAGTGGCTGCCGCCTCCATT
AACTGCTGCTCAAGACCCAGTCGGGATACTGATGGGCTTCAACTTCACACAGATGGCATCTTGTCCTTCT
TGAAGAACAACAAGCCAGGGGATGCCTTGTGCGTGCTGGGCCTCACGCTGGCTGACCTGTACCCCCATGA
TGCCTGGACCTTCACCTTCGGCAGATTTCTTCCGGGGCACGAAGTGGGTGTGTGTAGCTTCGCTCGCTTC
TCTGGAGAGTTCTTGCAGGCCGGGTCCAGTGTTCCTGACTCAGCTCTGCTGGAGGCAGCAGCAGCAGGTG
GCCCCGAGACGCTGCCTCGTGAGCGAGGACGGACCCTGTGCTTCAGCGCCCTGGGCATGGTTCAGTGCTG
CAAGGTCACCTGCCATGAGCTCTGCCACCTCCTGGGCCTGGGGAGCTGTCGCTGGCTCCGCTGCCTCCTG
CAGGGGGCGCTTAGCCTGGATGAGGTGCTCCGTCGGCCCCTGGACCTCTGTCCCATCTGCTTGAGGAAGT
TGCATCACCTCCTGGGCTTCAGGCTCCTGGAGAGGTACAAGAGACTCCATGCTTGGACTCGGGTGATGGT
GGAGATATGGTCTGGTCAAGAGGCTGGGGAGCCATCTGTGTCGGAGGACACCTTACCCTTCAGTGCTGAC
TCAGGCATGGGCTGTGAGAGTGACACGGAGCCTGTCACCAGCCCGTCAGAGCCTGTCACCCCTGATGGGT
GGAGTCATCCCTTCCCTGACGGACCTGAACCAGTATCTGAGGATGGGCTGGGCTCTCTCATGGCCTCAGA
AGTGTCGCTGACCCTCGGGGGGCCGGTGGACGCCATGGAGGAGTATGGACAGTGGCTGACTGCGTGCATC
CAGACCCTGGAGAGGGAGGGAGCTGAAGAGGAGCTGCTCCAGGTGGATGCGGCTGTGGATGCCCTGAGCC
GGTGGGAGATGTTCACAGGGCAGCTCCCGGTGACCAAGCAGCACGTGCCCTGTGGCAAGGATAATGTGGG
ACTGCGCAGGGTCCTGGGAGACAAGTTCTCTTCCCTGAGGCGCCGGCTGAGCTCACGAAGATTTGCCAAG
GCCAGTTCTTCCCACTGCCGCTGGGGGGCAGAGAATTAA

Translation (502 aa):
MVQCKPPQEFSFGPRALKDALISCDLALKQMYTSAFSPSERLFLSEAYNPNRTLFSTLLIHSAYDWLLSR
PEAPEDFETFHASLQLRKQSLARKHIYLQPIDLSEGLAGCPLLDHLRSCAEAFFLGLRVKCLPSVAAASI
NCCSRPSRDTDGLQLHTDGILSFLKNNKPGDALCVLGLTLADLYPHDAWTFTFGRFLPGHEVGVCSFARF
SGEFLQAGSSVPDSALLEAAAAGGPETLPRERGRTLCFSALGMVQCCKVTCHELCHLLGLGSCRWLRCLL
QGALSLDEVLRRPLDLCPICLRKLHHLLGFRLLERYKRLHAWTRVMVEIWSGQEAGEPSVSEDTLPFSAD
SGMGCESDTEPVTSPSEPVTPDGWSHPFPDGPEPVSEDGLGSLMASEVSLTLGGPVDAMEEYGQWLTACI
QTLEREGAEEELLQVDAAVDALSRWEMFTGQLPVTKQHVPCGKDNVGLRRVLGDKFSSLRRRLSSRRFAK
ASSSHCRWGAEN


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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