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Report for CCDS18935.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18935.1 Public Mus musculus 4 Fbxo2 23 108 98 CCDS HistoryNCBI Gene:230904Re-query CCDS DB by CCDS ID:18935.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18935.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047951.8 ENSMUSP00000037377.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047951.8Link to Ensembl Protein Viewer:ENSMUSP00000037377.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000047951Re-query CCDS DB by Protein ID:ENSMUSP00000037377
Original member NCBI NM_176848.1 NP_789818.1 Updated not alive Link to Nucleotide Sequence:NM_176848.1Link to Protein Sequence:NP_789818.1Re-query CCDS DB by Nucleotide ID:NM_176848Re-query CCDS DB by Protein ID:NP_789818
Current member NCBI NM_176848.2 NP_789818.1 Accepted alive Link to Nucleotide Sequence:NM_176848.2Link to Protein Sequence:NP_789818.1Re-query CCDS DB by Nucleotide ID:NM_176848Re-query CCDS DB by Protein ID:NP_789818Link to BLAST:NP_789818.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_789818.1 297 Q80UW2 297 100% 0 0

Chromosomal Locations for CCDS 18935.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 148160690 148160711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 148164075 148164455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 148164826 148164955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 148165028 148165123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 148165644 148165773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 148165965 148166099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (894 nt):
ATGGATGGAGATGGTGATCCAGAGAGTGTGAGCCACCCCGAAGAAGCGAGCCCAGAGGAGCAGCCAGAGG
AGGCGGGCGCCGAGGCGAGTGCGGAGGAGGAGCAGCTCCGGGAGGCGGAGGAGGAGGAAGAGGCGGAGGC
CGTGGAGTACCTGGCCGAGCTGCCGGAGCCACTGCTGCTGCGCGTGCTGGCCGAGCTGCCAGCTACGGAG
CTGGTGCAGGCCTGCCGCCTGGTGTGCCTGCGCTGGAAGGAGCTGGTGGACGGCGCCCCACTGTGGCTGC
TCAAGTGCCAGCAGGAGGGGCTGGTGCCCGAGGGCAGCGCTGATGAGGAGCGGGACCACTGGCAACAGTT
CTACTTTCTGAGCAAGAGGAGGCGCAACCTGCTGCGCAACCCTTGTGGGGAAGAGGACTTGGAGGGCTGG
AGCGACGTGGAGCACGGTGGGGACGGCTGGAGGGTGGAGGAACTGCCCGGAGACAATGGGGTGGAATTTA
CCCAAGATGACAGCGTTAAGAAATACTTCGCCTCCTCCTTCGAGTGGTGTCGCAAAGCGCAGGTCATTGA
TCTGCAGGCAGAGGGCTACTGGGAGGAGCTACTGGACACCACCCAGCCCGCCATCGTGGTGAAGGACTGG
TACTCGGGTCGCACTGATGCGGGCAGCCTGTATGAGCTCACTGTGAGGCTGCTGTCGGAGAACGAAGATG
TGCTGGCGGAGTTCGCTACAGGACAGGTGGCTGTGCCAGAGGACGGCAGTTGGATGGAGATCTCCCACAC
CTTCATCGACTACGGGCCAGGTGTCCGCTTTGTCCGCTTCGAGCACGGAGGGCAGGACTCGGTCTACTGG
AAGGGCTGGTTCGGGGCCCGGGTGACCAACAGTAGCGTGTGGGTGGAACCCTGA

Translation (297 aa):
MDGDGDPESVSHPEEASPEEQPEEAGAEASAEEEQLREAEEEEEAEAVEYLAELPEPLLLRVLAELPATE
LVQACRLVCLRWKELVDGAPLWLLKCQQEGLVPEGSADEERDHWQQFYFLSKRRRNLLRNPCGEEDLEGW
SDVEHGGDGWRVEELPGDNGVEFTQDDSVKKYFASSFEWCRKAQVIDLQAEGYWEELLDTTQPAIVVKDW
YSGRTDAGSLYELTVRLLSENEDVLAEFATGQVAVPEDGSWMEISHTFIDYGPGVRFVRFEHGGQDSVYW
KGWFGARVTNSSVWVEP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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