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Report for CCDS18516.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18516.1 Public Mus musculus 4 Tesk2 23 108 98 CCDS HistoryNCBI Gene:230661Re-query CCDS DB by CCDS ID:18516.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18516.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045542.12 ENSMUSP00000041009.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045542.12Link to Ensembl Protein Viewer:ENSMUSP00000041009.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000045542Re-query CCDS DB by Protein ID:ENSMUSP00000041009
Original member Current member NCBI NM_146151.4 NP_666263.3 Accepted alive Link to Nucleotide Sequence:NM_146151.4Link to Protein Sequence:NP_666263.3Re-query CCDS DB by Nucleotide ID:NM_146151Re-query CCDS DB by Protein ID:NP_666263Link to BLAST:NP_666263.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666263.3 570 Q8VCT9 570 100% 0 0

Chromosomal Locations for CCDS 18516.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 116741697 116741918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116751105 116751226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116771800 116771848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116792088 116792234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116800533 116800615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116801160 116801244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116801449 116801532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116801720 116801806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116802224 116802341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116802597 116803312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1713 nt):
ATGGATCGGAGCAAGCGGAACTCAATTGCAGGGTTTCCCCCACGTGTGGAGCGTCTGGAAGAATTTGAAG
GAGGTGGTGGAGGGGATGGGAACACTGTGCAGGTGGGAAGAGTTTCATCATCTTCATATCGTGCGATTAT
TAGTGCCTTTTCCAGACTGACGAGTTTGGATGACTTCACCCGTGAAAAAATAGGATCTGGGTTCTTCTCC
GAAGTGTTCAAGGTGCGACACAGAGCTTCTGGTCAGGTGATGGCTCTCAAGATGAACACGCTGAGCAGTA
ACCGAGCAAACCTGCTGAAAGAGATGCAGCTCATGAATAGACTCTCCCACCCCAACATCCTCAGGTTCAT
GGGTGTATGTGTACATCAAGGACAGTTGCATGCACTTACAGAGTATATCAACTCTGGGAACCTGGAGCAG
CTGCTGGACAGTGACTTGTATTTACCGTGGACTGTGAGAGTGAAACTGGCCTATGACATAGCAGTGGGCC
TCAGCTACCTTCACTTCAAAGGCATTTTCCATCGGGACCTCACATCAAAGAACTGCCTGATAAAGAGAGA
TGAAAACGGTTACTCTGCTGTGGTAGCTGACTTCGGCCTGGCTGAGAAGATCCCTGACGCTAGTATAGGG
AGGGAGAAGCTAGCTGTGGTGGGCTCGCCTTTCTGGATGGCACCTGAGGTTCTCCGAGATGAGCCTTATA
ATGAGAAGGCAGATGTCTTCTCTTATGGTATCATCCTCTGCGAGATCATCGCCCGCATTCAGGCTGATCC
GGACTATCTTCCCCGCACAGAGAATTTCGGGCTGGATTACGATGCTTTCCAGAACATGGTGGGAGACTGC
CCCTCAGACTTCCTGCAGCTCACCTTTAACTGCTGTAATATGGACCCCAAACTGCGCCCATCCTTTGAGG
AGATTGGGAAGACCCTAAAGGAAATTATGAGCCGCTTACCGGAAGAAGAGTTGGAGAGAGATAGGAAGCT
ACAGCCCACAGCTAAAGGACCACTGGAGAAAGTGCCTGGAGGGAAGCGACTGAGTTCACTGGATGACAAG
ATTCCCCACAAGTCTCCACGTCCAAGACGTACTATCTGGCTGTCTCGAAGCCAGTCAGATATTTTTTCTC
ATAAGCCCCCACGTACAGTCAGTGTCTTGGACCCCTATTACCAGCCACGAGATGGTGCTACACATACCCC
AAAAGTCAACCCTTTCAGTGCACGCCAAGACCTCAAGGGCGGGAAGGTCAAATTCTTTGACCTACCCAGC
AAATCTGTCATTTCCCTTGTATTTGACCTGGATGCACCGGGGCCTGGAAGTACAACTCTGGCTGACTGTC
AGGAGCCTTTGGCCATGTCTTCCAGACGGTGGCGGTCTTTGCCTGGTTCACCTGAGTTCTTGCATCAGGC
TTGTCCATTTATGGGCTGTGAAGAATCACTCTCTGATGGGCCTCCACCACGACTCAGTAGTCTCAAGTAC
GGAGTAAGAGAGATCCCACCATTCCGGACATCTGCCCTATCAGCTGCTTCAGGCCACGAGGCCATGGACT
GCTCTAACCCCCAAGAAGAGAACGGTTTTGGACCCAGGCTTAAGGGGACCAGCCTATGCACTGGGGCTGC
CTCTGAGGAGATGGAGGTGGAAGAGGAAAGGCCACGAAGAGCTTCTGTCTACTTCTCTATCTCTGGAATA
AGCTTGCAAACCCAGGCAAAGCAGGATGGGTGA

Translation (570 aa):
MDRSKRNSIAGFPPRVERLEEFEGGGGGDGNTVQVGRVSSSSYRAIISAFSRLTSLDDFTREKIGSGFFS
EVFKVRHRASGQVMALKMNTLSSNRANLLKEMQLMNRLSHPNILRFMGVCVHQGQLHALTEYINSGNLEQ
LLDSDLYLPWTVRVKLAYDIAVGLSYLHFKGIFHRDLTSKNCLIKRDENGYSAVVADFGLAEKIPDASIG
REKLAVVGSPFWMAPEVLRDEPYNEKADVFSYGIILCEIIARIQADPDYLPRTENFGLDYDAFQNMVGDC
PSDFLQLTFNCCNMDPKLRPSFEEIGKTLKEIMSRLPEEELERDRKLQPTAKGPLEKVPGGKRLSSLDDK
IPHKSPRPRRTIWLSRSQSDIFSHKPPRTVSVLDPYYQPRDGATHTPKVNPFSARQDLKGGKVKFFDLPS
KSVISLVFDLDAPGPGSTTLADCQEPLAMSSRRWRSLPGSPEFLHQACPFMGCEESLSDGPPPRLSSLKY
GVREIPPFRTSALSAASGHEAMDCSNPQEENGFGPRLKGTSLCTGAASEEMEVEEERPRRASVYFSISGI
SLQTQAKQDG


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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