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Report for CCDS18451.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18451.1 Public Mus musculus 4 Tut4 23 108 98 CCDS HistoryNCBI Gene:230594Re-query CCDS DB by CCDS ID:18451.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 18451.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043368.11 ENSMUSP00000044836.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043368.11Link to Ensembl Protein Viewer:ENSMUSP00000044836.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000043368Re-query CCDS DB by Protein ID:ENSMUSP00000044836
Original member NCBI NM_175472.3 NP_780681.2 Updated not alive Link to Nucleotide Sequence:NM_175472.3Link to Protein Sequence:NP_780681.2Re-query CCDS DB by Nucleotide ID:NM_175472Re-query CCDS DB by Protein ID:NP_780681
Current member NCBI NM_175472.4 NP_780681.2 Accepted alive Link to Nucleotide Sequence:NM_175472.4Link to Protein Sequence:NP_780681.2Re-query CCDS DB by Nucleotide ID:NM_175472Re-query CCDS DB by Protein ID:NP_780681Link to BLAST:NP_780681.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780681.2 1644 B2RX14 1644 100% 0 0

Chromosomal Locations for CCDS 18451.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 108478964 108479741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108486454 108486617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108491348 108491464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108495150 108495327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108496967 108497055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108499347 108499398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108502966 108503035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108505824 108505950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108507907 108508026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108508221 108508433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108512036 108512210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108512872 108513566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108517383 108517533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108520207 108520293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108523204 108523307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108526768 108526825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108526916 108527019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108529217 108529306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108530836 108530949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108542011 108542088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108542266 108542443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108542662 108542709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108542794 108542876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108548055 108548170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108549241 108549413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108550713 108550813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108555382 108555829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108557322 108557474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108558715 108558785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4935 nt):
ATGGAAGAGCCCAAGACTTCTAAAAACGAAAATCATGAACCAAAGAAGAATATTATTTGTGAAGAAAGCA
AAGCAGTTAAAATTATATCTAATCAAACCTTGAAGCCTAGAAATGATAAGTCAGAAATTGGGACCAGCTC
TCTGAATAGAAATAGTAGTAAAAAAACCAAGCAAAATGATATTTGTATAGAAAAAACAGAAGCTAAATCA
TGTAAAGTAAACGCTGCCAGTGTTCCAGGCCCTAAAGATTTGGGGTTAGTACATCGAGATCAAAGTCATT
GCAAAATGAAAAAGTTACCAAATTCACCCATGAAAGCCCAGAAGGGATCTTCACAGACAAAATTAGAAAA
GACACCTAGTTTACAGACAAAAGCAGAAAAAGTACCAAAGTCTCCAAATTTACCAGTAAAAGCAGAAAAA
GCGCCCTGTACAACAGCAGAAGCAACAACAGAAAAAGCACTTAATTCACAGAGAAAAGAAGAAAACACAC
CCACTTCTCAGATGAAATTACAGAAGACACCCAGATCACCTTTAGAGCCAGAAAATGTGCCCAGTTTACT
ATTGAAAGAAAATGTGAAACAGACAGAATCACAACAGACTGGGAAGAAACTTACAAGCTCCTTTGTTTCT
ATGGATAAAAGGAAGAGTGAAGCTCTACAGGGAGAAAAGTCAGCTCTGGAAAACTCATCACTATCTCAGA
AGCAGCAGACTCAGACAGATAATATTGCTGATTCTGATGACAGTGCTTCAGGGATTGAAGATACAGCAGA
TGATTTGAGTAAAATGAAGAGTGAGGAATCTAACAAAGAAAATTCTTCTGAGATGGACTATTTAGAAAAT
GCCACTGTAATAGATGAATCTGCTTTGACACCTGAGCAGAGGCTAGGCTTGAAACAAGCAGAAGAACGTC
TAGAAAGAGATCACATCTTCCGACTTGAAAAACGGTCACCAGAATATACCAATTGCCGCTATCTATGCAA
ACTTTGCTTAATTCACATTGAAAACATCCAAGGAGCACATAAACATATAAAAGAAAAACGACATAAGAAA
AATATTTTGGAAAAACAAGAAGAGAGTGAACTTCGGTCTCTTCCATCTCCTTCCTCTGCTCACTTGGCTG
CTTTAAGTGTTGCAGTTGTTGAGTTAGCAAAAGAACAAGGAATAACAGATGATGACCTCAGAATCCGCCA
GGACATTGTGGAGGAAATGTCAAAGGTTATAATGACATTTTTACCAGAATGTTCACTGAGGTTGTATGGT
TCATCTCTGACAAAGTTTGCTCTGAAAAGCAGTGATGTTAATATAGATATAAAATTTCCTCCCAAGATGA
ATCATCCAGATCTTCTGATACAAGTGCTTGGAATTCTGAAAAAAAGTGCATTATATATAGATGTGGAATC
TGATTTTCATGCTAAAGTTCCTGTTGTGGTGTGCAAAGATCGGAAAAGTGCTTTACTGTGTAGAGTAAGT
GCAGGAAATGATATGGCGTGTCTCACAACTGACTTACTTGCTGCTCTTGGCAAAGTGGAACCCGTCTTCA
CTCCCTTAGTGCTAGCTTTTCGCTATTGGGCTAAGCTGTGCTATATTGACTCCCAAACTGATGGTGGAAT
CCCTTCTTACTGCTTTGCTTTGATGGTGATGTTTTTTCTTCAACAAAGAAAACCCCCTCTTCTTCCTTGC
TTACTTGGAAGTTGGATTGAAGGCTTTGACCCGAAAAGAATGGATGACTTTCAGCTGAAGGGCATAGTAG
AAGAGAAGTTTGTGAAGTGGGAATATAATTCAAGTAGTGCAACTGAGAAAAACTTAATTGCTGATGAAAA
CAAAGCTAAGGCAGACGAACCAAAAGATGATACCAAGAAGACAGAAACAGACAACCAAAGTAATGCTGCG
AAGGCAAAACATGGCAAATCTCCTTTAACATTGGAAGCACCAAATCAGGTACCCTTGGGACAGTTGTGGT
TGGAGCTGCTAAAATTTTACACACTGGATTTTGCTTTGGAGGAATATGTCATATGTGTACGGATACAAGA
TATTCTAACTAGAGAGAACAAAAACTGGCCTAAAAGGCGGATAGCCATTGAAGATCCATTTTCAGTCAAG
AGGAATGTTGCCCGGAGCTTAAACAGCCAGCTTGTATACGAATATGTTGTGGAAAGATTCAGAGCAGCTT
ATCGATATTTTGCCTGTCCTCAAAAGAAGGGTGGAAATAAATCTACAATGGATCCTAAGAAGAAAGAGAA
GGGGAAGCTAAGCAGTAAGAAACCAGTGAAGTCTGATTGTTCGGCAACCAATTGTTGCATTCTTGGGGAA
AGTGCAGAAAAAATACATATGGAAAGAGGCCAACCTGCTAAACATGATGAAACGGAGTTTACATCACAGA
GATGTATTGTTGATAATGACAGTTTATTGGTAAATGAACTAGGTTTGGCTAACCATGGACAAGATTCTTC
ATCTCTTTCTACTGCCAGTGGAGGCAGTGACTTAAAGCAAAAATCAGCTGAGAAACAAGGTGATTTAACA
CCTTCAGAAACTTCCTTAAAGAAGGAACTCAGCCAGTGTATTTGCATTGGGACCCCTGATGGAGCTGAAT
CTGCTGGAACAGACTGCAGATCAAACTTAGAAATGGACAGTTCACATCAGATTGTGTGCAACAATGTATC
TGCTACCTCTTGCAACTGCAAAGCTACAGAAGTTACTTCTGACCTTGTTGATGAGGATAACCTCCCCTCC
CAGGAATTATATTATGTGTTTGATAAGTTCATTTTAACCTCTGGCAAGCCGCCAACAATAGTATGCAGCA
TCTGCAAAAAGGATGGCCATTCAAAAAATGATTGTCCAGAGGATTTCAGGAAAATTGATCTAAAACCTCT
ACCACCAATGACAAACCGATTTCGAGAAATACTTGATTTAGTATGTAAAAGATGTTTTGATGAATTATCA
CCACCTTGCTCTGAACAACACAACAGGGAACAAATTTTAATTGGCTTGGAAAAGTTTATTCAAAAAGAAT
ATGATGAAAAAGCAAGATTGTGCTTATTTGGTTCTTCTAAGAATGGATTTGGATTCCGAGATAGTGATCT
GGATATTTGTATGACTCTGGAAGGCCATGAAAATGCAGAGAAATTAAACTGTAAAGAAATAATTGAAAAT
TTGGCGAAAATTCTTAAGAGGCATCCAGGTTTAAGAAACATTCTGCCTATAACTACTGCCAAAGTGCCTA
TTGTAAAATTTGAACACAGGAGAAGTGGACTAGAAGGTGATATCAGTTTATATAACACATTGGCTCAACA
CAACACAAGAATGCTAGCTACTTATGCAGCTATTGATCCTAGAGTACAGTACTTGGGATATACTATGAAA
GTGTTTGCAAAGCGCTGTGACATTGGAGATGCATCTCGGGGAAGTTTATCTTCATATGCTTACATCCTTA
TGGTGCTGTACTTTCTGCAGCAAAGAAAGCCACCAGTTATCCCAGTTCTACAAGAGATCTTTGATGGGAA
GCAGATTCCGCAGAGAATGGTTGATGGATGGAATGCCTTTTTCTTTGATAAAACAGAAGAGCTGAAAAAG
CGTTTACCTTCACTTGGGAAGAACACGGAATCACTGGGAGAGCTTTGGTTAGGACTGCTTCGCTTCTATA
CAGAAGAGTTTGATTTTAAGGAGTATGTAATCAGTATTCGGCAGAAGAAGCTGCTGACCACTTTTGAAAA
GCAGTGGACTTCTAAATGCATTGCAATTGAAGATCCTTTTGACTTGAATCATAACCTTGGTGCTGGTGTT
TCTAGAAAAATGACTAATTTTATTATGAAGGCGTTTATCAATGGAAGGAAACTTTTTGGTACCCCCTTTT
ATCCACTCATTGGCAGAGAAGCTGAGTACTTCTTTGATTCAAGAGTACTAACAGATGGAGAGTTGGCTCC
TAATGATCGTTGTTGCCGTGTGTGTGGAAAAATAGGTCACTACATGAAAGACTGTCCCAAAAGGAAAAGA
CTAAAGAAGAAAGACAGTGAAGAAGAGAAGGAAGGGAACGAAGAAGAAAAAGACTCCCGTGACCTTCTTG
ACTCCCGAGACCTTAGGTGTTTCATATGTGGAGATGCTGGACATGTTCGCCGCGAATGCCCAGAGGTCAA
GATGGCCCGCCAGAGGAATAGTAGTGTGGCAGCAGCCCAGCTGGTCCGTAACCTTGTAAATGCTCAGCAG
GTGGCTGGTTCAGCGCAGCAACAGAGTGACCAGTCCATAAGGACCAGACAGTCTTCAGAATGTTCTGATT
CACCATCTTATTCTCCTCAGCCTCAGCCTTTTCCACAGAATTCTCCCCAACCATCTGCTCTTCCCCCACC
TCCATCCCAGCCAGGATCCCAGCCTAAGCTTGGCCCACCCCAGCAGGGAGGGCAGCCCCCTCATCAGGTT
CAGATGCCCTTGTATAACTTTCCTCAGTCACCTCCAGCTCATTATTCACCCATGCACAGTATGGGGTTAC
TGCCAATGCACCCCCTGCAGATCCCTGCCCCATCGTGGCCCATCCACGGCCCGATGCTGCACTCTGCACC
TGGCAGCACCCCCAGCAACATTGGCTTGAATGATCCCAGCATCATCTTTGCACAGCCTGCTGCCAGGCCC
ATGGCAATTCCCAGCCCTTCTCACGATGGACACTGGCCTCGGACCGTGGCTCCCAATTCCCTGGTGAACA
ATGGTGCAGTGGGTAATTCGGAGCCACGCTTTCGAGGACTAAATCCTCCAATTCCATGGGAACATGCACC
ACGCCATTTCCCCCTTGTCCCAGCTTCGTGGCCTTACGGTTTGCATCAAAATTTCATGCATCAGGGAAAT
CCAAGATTTCAGCCCAAACCCTTCTATGCTCAAGCAGACAGATGTGCCACGCGTCGCTGTAGAGAGCGCT
GTCCCCACCCACCACGAGGAAACGTGTCCGAGTAA

Translation (1644 aa):
MEEPKTSKNENHEPKKNIICEESKAVKIISNQTLKPRNDKSEIGTSSLNRNSSKKTKQNDICIEKTEAKS
CKVNAASVPGPKDLGLVHRDQSHCKMKKLPNSPMKAQKGSSQTKLEKTPSLQTKAEKVPKSPNLPVKAEK
APCTTAEATTEKALNSQRKEENTPTSQMKLQKTPRSPLEPENVPSLLLKENVKQTESQQTGKKLTSSFVS
MDKRKSEALQGEKSALENSSLSQKQQTQTDNIADSDDSASGIEDTADDLSKMKSEESNKENSSEMDYLEN
ATVIDESALTPEQRLGLKQAEERLERDHIFRLEKRSPEYTNCRYLCKLCLIHIENIQGAHKHIKEKRHKK
NILEKQEESELRSLPSPSSAHLAALSVAVVELAKEQGITDDDLRIRQDIVEEMSKVIMTFLPECSLRLYG
SSLTKFALKSSDVNIDIKFPPKMNHPDLLIQVLGILKKSALYIDVESDFHAKVPVVVCKDRKSALLCRVS
AGNDMACLTTDLLAALGKVEPVFTPLVLAFRYWAKLCYIDSQTDGGIPSYCFALMVMFFLQQRKPPLLPC
LLGSWIEGFDPKRMDDFQLKGIVEEKFVKWEYNSSSATEKNLIADENKAKADEPKDDTKKTETDNQSNAA
KAKHGKSPLTLEAPNQVPLGQLWLELLKFYTLDFALEEYVICVRIQDILTRENKNWPKRRIAIEDPFSVK
RNVARSLNSQLVYEYVVERFRAAYRYFACPQKKGGNKSTMDPKKKEKGKLSSKKPVKSDCSATNCCILGE
SAEKIHMERGQPAKHDETEFTSQRCIVDNDSLLVNELGLANHGQDSSSLSTASGGSDLKQKSAEKQGDLT
PSETSLKKELSQCICIGTPDGAESAGTDCRSNLEMDSSHQIVCNNVSATSCNCKATEVTSDLVDEDNLPS
QELYYVFDKFILTSGKPPTIVCSICKKDGHSKNDCPEDFRKIDLKPLPPMTNRFREILDLVCKRCFDELS
PPCSEQHNREQILIGLEKFIQKEYDEKARLCLFGSSKNGFGFRDSDLDICMTLEGHENAEKLNCKEIIEN
LAKILKRHPGLRNILPITTAKVPIVKFEHRRSGLEGDISLYNTLAQHNTRMLATYAAIDPRVQYLGYTMK
VFAKRCDIGDASRGSLSSYAYILMVLYFLQQRKPPVIPVLQEIFDGKQIPQRMVDGWNAFFFDKTEELKK
RLPSLGKNTESLGELWLGLLRFYTEEFDFKEYVISIRQKKLLTTFEKQWTSKCIAIEDPFDLNHNLGAGV
SRKMTNFIMKAFINGRKLFGTPFYPLIGREAEYFFDSRVLTDGELAPNDRCCRVCGKIGHYMKDCPKRKR
LKKKDSEEEKEGNEEEKDSRDLLDSRDLRCFICGDAGHVRRECPEVKMARQRNSSVAAAQLVRNLVNAQQ
VAGSAQQQSDQSIRTRQSSECSDSPSYSPQPQPFPQNSPQPSALPPPPSQPGSQPKLGPPQQGGQPPHQV
QMPLYNFPQSPPAHYSPMHSMGLLPMHPLQIPAPSWPIHGPMLHSAPGSTPSNIGLNDPSIIFAQPAARP
MAIPSPSHDGHWPRTVAPNSLVNNGAVGNSEPRFRGLNPPIPWEHAPRHFPLVPASWPYGLHQNFMHQGN
PRFQPKPFYAQADRCATRRCRERCPHPPRGNVSE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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