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Report for CCDS18425.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18425.1 Public Mus musculus 4 Fam151a 23 108 98 CCDS HistoryNCBI Gene:230579Re-query CCDS DB by CCDS ID:18425.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 18425.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047620.2 ENSMUSP00000047860.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047620.2Link to Ensembl Protein Viewer:ENSMUSP00000047860.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000047620Re-query CCDS DB by Protein ID:ENSMUSP00000047860
Original member Current member NCBI NM_146149.1 NP_666261.1 Accepted alive Link to Nucleotide Sequence:NM_146149.1Link to Protein Sequence:NP_666261.1Re-query CCDS DB by Nucleotide ID:NM_146149Re-query CCDS DB by Protein ID:NP_666261Link to BLAST:NP_666261.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666261.1 608 Q8QZW3 608 100% 0 0

Chromosomal Locations for CCDS 18425.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 106733962 106734088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 106735450 106735596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 106742145 106742297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 106743197 106743356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 106745473 106745697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 106746056 106746195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 106746973 106747116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 106747539 106748269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1827 nt):
ATGTCCTGCAAGAAATGGTGCTCCAGCAGCCAGGCCAAGTGGATCCTTGCTGGCAGTGTCACTGTGACAC
TGGTGTTGGCCATTTCATTGATCCTAGGCCTAACCCTGCATCAGGGCACCCAACCAGGCTGTGAGAACGA
TGCAATTTGCGGTCCTGATGCTGACATGCTGGACTACCTGATGGGCATGGGCCAGATCAGCCACCGGGAT
GGCTTGCTGGTCACCTGGTACCACGCAGCCAACAGCAAGAAAGAGATGGCAGCTGCCCTAAACAGCGATG
TCATGGTCTTAGAAGCCGATGTCACCGTAGAAGGGTTCAACACAGCCAATGAGACCAAGGTGCCCATTAT
GGCCCACCCTCCAGCCATCTACAGTGACAACACCCTGCAGGAGTGGCTAGAAGCTGTACTGGCCTCATCT
CAGAAGGGCATCAAACTGGACTTCAAGAGTCTCAAGGCTGTAGGCCCCTCCCTGGACCTCCTTCGGCAGC
TGACTGAGGCTGGCAGGATTCGGAGACCAGTGTGGATCAATGCTGACATCCTGAGGGGCCCCAATGTGCC
CATCTCAATTGAGATCAATGCTACCCAGTTTCTGACTCTTGTCCAGGAGAAATATCCAAAGGCCACCATT
TCTCCAGGCTTTACCACTCTTTATGTGCCTCAGTTGCCAAACAGCACATACACCCAAGCCATGGTGGAAA
CAATGCAGGAGCTGGTCGGAGCGCTGCCACAGAAGGTCACCTTCCCAGTGAGAGCTGTCATGACACGGGC
TGCTTGGCCCCACTTCAGCTGGCTTCTGAGCCAATCTGAGAGGTACAGCCTAACACTGTGGCAGGGTGCC
TCAGACCCCGTGTCAGTAGAAGATCTCCTCTTCATCCGGGACAACAGTGCCGCTCACCAAATCTACTATG
ACCTCTTTGAGCCTGTCTTGTCGCAGTTTAAGCAGCTGGCCTTGAACACCACCCGGAAGCGAACCTACTA
CACAGGTGGCAGCCTGATCCCTCTTCTCCAGCAGCCCAAGGGTGATGGTCTGGAGGTAGAGTGGCTAGTT
CTGGAAGTGAATGGCAGTGGGAGAAGAGCAGCCATTACAGTTCCTGACAGAGAAGGCATGATCTTGCTGG
ACATTGGCCTCCAGGAACCTGAGGCTGGGAACCCTGTACCCATCCTACACACCCCAGGTGGCCCTGCTCT
GACACTGGAGTCGTGTCTGCTGCGTCTGGCTGTTCACCCCAGGCGCTGGGGCATCCATGTGAACATAGTG
GAACCCGAAGCTCTCCGGCCATCCCTGGCCACGTTAGCACACCTTTCTACCCTTGGCCATCTGCCCTGGC
CTGTGTGGGTGGGGTCCACAGTCTCACATGGTAGTTTTGTGGTCCCTGGCCACATAGCTGGCAGAGAGCT
GCTCACAGCTGTGGCTGAAGTCTTCCCCCATGTGACCGTGGCACCGGGCTGGCCCGAAGAGATGCTGGAC
AGTGGTTATCAGGAGCAGATGGTCACAGATATGCTGGAGCTGTGTCAGGGACTCCGGCAACCTGTGTCCT
TCCAGCTGCAGGCTGGGCCACTGAGTCAGAGTCCAGCCAACACTGTGGCCAGGCTCCTGGCCTCCTCCCC
TAGAGCCACTGTCACAGTGTACCACAGCACTGCTGGGAACAGCCATGTGGATTTGTGGGCTGGATTGTGG
GCGGCCAGGGCCGTGGACAGGACCCGAGTCTATTACAGGATATCCCAGGAGTACTGGAAAGACTTGCAGG
CAGATGTGAGCAGCAACCGACCATCCAGTAGGATTGGACCATCTAGTGTGGAAGGCTTCCCTGGGGAGTC
AAGGTGA

Translation (608 aa):
MSCKKWCSSSQAKWILAGSVTVTLVLAISLILGLTLHQGTQPGCENDAICGPDADMLDYLMGMGQISHRD
GLLVTWYHAANSKKEMAAALNSDVMVLEADVTVEGFNTANETKVPIMAHPPAIYSDNTLQEWLEAVLASS
QKGIKLDFKSLKAVGPSLDLLRQLTEAGRIRRPVWINADILRGPNVPISIEINATQFLTLVQEKYPKATI
SPGFTTLYVPQLPNSTYTQAMVETMQELVGALPQKVTFPVRAVMTRAAWPHFSWLLSQSERYSLTLWQGA
SDPVSVEDLLFIRDNSAAHQIYYDLFEPVLSQFKQLALNTTRKRTYYTGGSLIPLLQQPKGDGLEVEWLV
LEVNGSGRRAAITVPDREGMILLDIGLQEPEAGNPVPILHTPGGPALTLESCLLRLAVHPRRWGIHVNIV
EPEALRPSLATLAHLSTLGHLPWPVWVGSTVSHGSFVVPGHIAGRELLTAVAEVFPHVTVAPGWPEEMLD
SGYQEQMVTDMLELCQGLRQPVSFQLQAGPLSQSPANTVARLLASSPRATVTVYHSTAGNSHVDLWAGLW
AARAVDRTRVYYRISQEYWKDLQADVSSNRPSSRIGPSSVEGFPGESR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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