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Report for CCDS38612.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38612.1 Public Mus musculus 3 Trmt13 23 108 98 CCDS HistoryNCBI Gene:229780Re-query CCDS DB by CCDS ID:38612.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38612.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041524.10 ENSMUSP00000047320.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041524.10Link to Ensembl Protein Viewer:ENSMUSP00000047320.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000041524Re-query CCDS DB by Protein ID:ENSMUSP00000047320
Original member Current member NCBI NM_030016.3 NP_084292.1 Accepted alive Link to Nucleotide Sequence:NM_030016.3Link to Protein Sequence:NP_084292.1Re-query CCDS DB by Nucleotide ID:NM_030016Re-query CCDS DB by Protein ID:NP_084292Link to BLAST:NP_084292.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084292.1 481 Q8BYH3 481 100% 0 0

Chromosomal Locations for CCDS 38612.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 116581412 116581610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116582494 116582923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116585196 116585270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116585755 116585827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116588472 116588639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116589491 116589597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116589734 116589803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116590230 116590292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116592193 116592259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116592464 116592510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116594639 116594785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1446 nt):
ATGGAGGCTCCGGCGGCGACTTCGCCCTCGATCGGATTTCCCATCGACGGCAGATGCAACTACTTCGTAG
AAAAGAAGAAGCGCTTCTGCAGGATGGTGGCGGCCGCGGGGAAAAGGTTCTGTGGCGAACACGCTGGCTC
CGCCGAGGAAGAAAATACTCGGAAAAGAATCTTGTGTCCTTTAGATCCAAAACACACAGTGTATGAAGAC
CAACTAGCAAAACATTTGAAAAAATGTAATTCAAGAGAGAAGCCTAAGCCTGATTTCTTTATTCAAGATA
TAAATGCAGGATTAAAGGATGAAACAGAGATTCCTGAGCAATTAGTTCCATTTTCTTCTCTATCTGAAGA
GCAGTTGGAGAACTTAATTAAGAAATTGAGAAAAGCAAGTGAAGGCTTGAATTCTACACATGAAGATCAC
ATCATGTCCCATCCAGCATTGCATGATGCCCTTAATGACCCAAGGAATGGCGATTGTGCAGTCAAACACC
TGAAACAGCAGGCTTCTATTCTAGGCAACATTGAAAAGTTAAAGTTACTTGGCCCAAGAAGATGCTTTGT
TGAGTTTGGAGCAGGAAAGGGGAAATTATCTCACTGGGTTGATATTGCCTTAAAAGATGCTGAAAATGTT
CACTTCATCCTGGTAGAAAGAGTGACCACAAGATTCAAGGTAGATGGTAAACACAGAAAAAAGGACTCAG
TGTTTGAAAGGCTTCAAATTGATATCCAGCACTTGTGTTTGAACAGGGTTCCTGTGCTAAGAGAAGGAAG
ACTGCCCGTGGTAGGAATTGGGAAGCACCTGTGTGGGGTGGCGACAGATGTTGCATTACGATGTTTGGTT
GAAACCTATGCTGCCAGTTTTGAGGAAAAGGATGAAGAACCTTTAGCCAAACGCATAAAGAATGATAAGA
CAGAAAAAGAAAGTAACACTTTGGCCAAGGAAGGAAGTGAAAAAGATGTCCCAGAGACATGGACCCCGGT
GGCTGGCATTGTGATTGCGCTCTGTTGTCACCACAGGTGTGACTGGAGACATTATGTGGGCAAAGAGTAT
TTCAAGGCTCTTGGACTTGGGGCGGTAGAGTTCTACTATTTCCAGAGAATGAGTAGTTGGGCAACGTGTG
GAATGAGGACATCGTTGGAAGGCTCGGATGTTACTCCAGAGAGAAAAGATGCTCAAAGGGATGAGAATGA
AGAGCACGATGATGGAGGAGACAGACTCACAGATGGCAACACTGACAGTTTGCCTGGGATTCTTACTGTT
GAAGAAAAGAAGAAAATAGGACATCTTTGTAAACTGCTGATTGACCAAGGCAGACTCCAGTATTTACAGC
AGAAAGGCTTCAGTCCTGCCTTACAGTACTATACGGACCCATTGGTGTCTCTGGAAAACGTATTATTAAC
TGCCGTACCAGCTCATCCGTCATCGCAGGAAAAACATCATCAATGA

Translation (481 aa):
MEAPAATSPSIGFPIDGRCNYFVEKKKRFCRMVAAAGKRFCGEHAGSAEEENTRKRILCPLDPKHTVYED
QLAKHLKKCNSREKPKPDFFIQDINAGLKDETEIPEQLVPFSSLSEEQLENLIKKLRKASEGLNSTHEDH
IMSHPALHDALNDPRNGDCAVKHLKQQASILGNIEKLKLLGPRRCFVEFGAGKGKLSHWVDIALKDAENV
HFILVERVTTRFKVDGKHRKKDSVFERLQIDIQHLCLNRVPVLREGRLPVVGIGKHLCGVATDVALRCLV
ETYAASFEEKDEEPLAKRIKNDKTEKESNTLAKEGSEKDVPETWTPVAGIVIALCCHHRCDWRHYVGKEY
FKALGLGAVEFYYFQRMSSWATCGMRTSLEGSDVTPERKDAQRDENEEHDDGGDRLTDGNTDSLPGILTV
EEKKKIGHLCKLLIDQGRLQYLQQKGFSPALQYYTDPLVSLENVLLTAVPAHPSSQEKHHQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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