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Report for CCDS75259.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
75259.1 Public Homo sapiens 5 FOXD1 24 110 108 CCDS HistoryNCBI Gene:2297Re-query CCDS DB by CCDS ID:75259.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 75259.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000615637.3 ENSP00000481581.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000615637.3Link to Ensembl Protein Viewer:ENSP00000481581.1Re-query CCDS DB by Nucleotide ID:ENST00000615637Re-query CCDS DB by Protein ID:ENSP00000481581
Original member Current member NCBI NM_004472.3 NP_004463.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004472.3Link to Protein Sequence:NP_004463.1Re-query CCDS DB by Nucleotide ID:NM_004472Re-query CCDS DB by Protein ID:NP_004463Link to BLAST:NP_004463.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004463.1 465 Q16676 465 100% 0 0

Chromosomal Locations for CCDS 75259.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 73446965 73448362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1398 nt):
ATGACCCTGAGCACTGAGATGTCCGATGCCTCTGGCCTCGCCGAGGAAACAGACATCGACGTGGTGGGGG
AG
GGCGAGGACGAAGAAGACGAGGAAGAGGAGGACGACGACGAGGGCGGCGGTGGCGGGCCCCGGCTGGC
T
GTCCCCGCGCAGCGGCGGCGGCGGCGGCGCTCGTACGCCGGGGAGGACGAGCTGGAGGATCTGGAGGAG
GAG
GAGGACGACGATGACATCCTGCTGGCCCCGCCTGCTGGGGGCTCCCCGGCGCCCCCGGGCCCGGCCC
CG
GCGGCGGGGGCAGGAGCCGGTGGGGGCGGCGGCGGCGGCGGCGCGGGCGGCGGCGGGAGCGCGGGTAG
C
GGCGCCAAGAACCCGCTGGTGAAGCCGCCCTACTCGTATATCGCGCTCATCACTATGGCCATCCTGCAG
AGC
CCCAAGAAGCGGCTGACGCTGAGCGAGATCTGTGAGTTCATCAGCGGCCGCTTCCCCTACTACCGGG
AG
AAGTTCCCCGCCTGGCAGAACAGCATCCGCCACAACCTCTCGCTCAACGACTGCTTCGTCAAGATCCC
C
CGCGAGCCCGGCAACCCGGGCAAGGGCAACTACTGGACGCTGGACCCGGAGTCCGCCGACATGTTCGAC
AAC
GGCAGCTTCCTGCGCCGGAGGAAGCGCTTCAAGCGGCAGCCGCTGCTCCCACCCAACGCCGCGGCCG
CC
GAGTCTCTGCTGCTGCGCGGCGCGGGAGCCGCAGGGGGCGCGGGCGACCCGGCAGCCGCCGCCGCGCT
C
TTCCCGCCCGCGCCCCCGCCGCCCCCGCATGCCTACGGCTACGGCCCCTACGGCTGCGGCTACGGCCTG
CAG
CTGCCGCCTTACGCGCCGCCCTCGGCCCTCTTCGCCGCCGCAGCGGCCGCCGCCGCCGCCGCCGCCT
TC
CACCCGCACTCGCCCCCGCCGCCCCCGCCACCGCACGGCGCGGCCGCCGAGCTGGCCCGGACCGCCTT
C
GGCTACCGGCCGCACCCGCTCGGCGCCGCCCTACCCGGCCCCCTGCCGGCCTCCGCGGCCAAGGCGGGC
GGC
CCGGGCGCCTCAGCGCTGGCGCGCTCGCCCTTCTCCATCGAGAGCATCATCGGGGGCAGCTTGGGCC
CG
GCCGCCGCTGCCGCCGCCGCCGCGCAGGCCGCCGCCGCCGCTCAGGCCTCGCCCTCGCCCTCGCCGGT
G
GCGGCGCCGCCAGCTCCCGGATCCAGCGGAGGAGGCTGCGCGGCGCAGGCGGCCGTGGGCCCGGCGGCC
GCG
CTCACCCGATCCCTCGTGGCCGCCGCGGCCGCCGCCGCCTCCTCAGTCTCCTCGTCCGCCGCCTTGG
GG
ACTCTGCACCAAGGGACTGCCCTGTCCAGTGTCGAGAACTTTACTGCTAGGATTTCCAATTGTTAA


Translation (465 aa):
MTLSTEMSDASGLAEETDIDVVGEGEDEEDEEEEDDDEGGGGGPRLAVPAQRRRRRRSYAGEDELEDLEE
E
EDDDDILLAPPAGGSPAPPGPAPAAGAGAGGGGGGGGAGGGGSAGSGAKNPLVKPPYSYIALITMAILQ
S
PKKRLTLSEICEFISGRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDPESADMFD
N
GSFLRRRKRFKRQPLLPPNAAAAESLLLRGAGAAGGAGDPAAAAALFPPAPPPPPHAYGYGPYGCGYGL
Q
LPPYAPPSALFAAAAAAAAAAAFHPHSPPPPPPPHGAAAELARTAFGYRPHPLGAALPGPLPASAAKAG
G
PGASALARSPFSIESIIGGSLGPAAAAAAAAQAAAAAQASPSPSPVAAPPAPGSSGGGCAAQAAVGPAA
A
LTRSLVAAAAAAASSVSSSAALGTLHQGTALSSVENFTARISNC




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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