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Report for CCDS38571.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38571.1 Public Mus musculus 3 Ampd1 23 108 98 CCDS HistoryNCBI Gene:229665Re-query CCDS DB by CCDS ID:38571.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38571.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000090715.12 ENSMUSP00000088217.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090715.12Link to Ensembl Protein Viewer:ENSMUSP00000088217.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000090715Re-query CCDS DB by Protein ID:ENSMUSP00000088217
Original member Current member NCBI NM_001033303.2 NP_001028475.2 Accepted alive Link to Nucleotide Sequence:NM_001033303.2Link to Protein Sequence:NP_001028475.2Re-query CCDS DB by Nucleotide ID:NM_001033303Re-query CCDS DB by Protein ID:NP_001028475Link to BLAST:NP_001028475.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028475.2 745 Q3V1D3 745 100% 0 0

Chromosomal Locations for CCDS 38571.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 103074096 103074117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103075407 103075418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103079029 103079203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103080952 103081117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103085307 103085472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103088317 103088536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103090045 103090174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103091144 103091338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103091617 103091748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103092301 103092464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103094400 103094526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103094714 103094877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103095642 103095762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103098670 103098843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103099026 103099136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103099540 103099698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2238 nt):
ATGCCTCTATTCAAACTAACAGGTCAAGGAAAACAAATTGATGATGCAATGCGTAGCTTTGCTGAAAAAG
TGTTTGCCTCTGAAGTCAAAGATGAGGGAGGTCGGCACGAGATCTCCCCCTTCGACGTGGATGAGATCTG
CCCAATTTCCCTTCATGAGATGCAGGCCCACATATTCCACATGGAGAACCTGTCCATGGATGGCAGGAGA
AAAAGGCGTTTCCAAGGACGGAAGACTGTTAATTTGTCCATTCCACAAAGTGAAACATCTTCTACCAAAC
TGTCCCACATCGAAGAATTTATTTCTTCATCCCCAACCTACGAGAGTGTGCCTGACTTCCAGAGGGTGCA
GATCACTGGAGACTATGCCTCGGGGGTAACCGTTGAAGACTTTGAGGTGGTTTGTAAAGGTCTCTATCGG
GCATTGTGTATACGAGAGAAATACATGCAGAAGTCATTCCAGAGGTTCCCCAAGACCCCCTCCAAGTACT
TGAGGAACATTGATGGCGAAGCCTTGGTAGGAAACGAGAGCTTCTACCCAGTATTTACCCCTCCTCCGAA
GAAGGGTGAAGACCCCTTTCGCACAGAGGACCTTCCTGCAAACCTGGGCTATCACCTCAAGATGAAAGCT
GGTGTGATTTACATCTACCCTGATGAAGCGGCAGCCAACAGAGATGAGCCCAAGCCCTACCCTTACCCAA
ATCTGGATGACTTCCTGGATGACATGAATTTTTTGCTTGCTCTAATTGCACAAGGGCCTGTTAAGACTTA
TGCTCACCGCCGCCTGAAGTTCCTCTCCTCCAAGTTCCAGGTCCATCAGATGCTCAACGAGATGGATGAG
CTGAAGGAGCTGAAGAACAACCCCCACCGGGACTTTTATAACTGCAGGAAGGTGGATACTCACATCCATG
CAGCTGCCTGCATGAACCAGAAGCACCTGCTGCGCTTCATTAAGAAATCTTACCATATTGACGCCGACAG
GGTGGTCTACAGCACTAAAGAGAAGAGCCTGACTCTGAAGGAACTTTTCGCTAAGTTGAATATGCATCCC
TATGACCTGACTGTTGACTCTCTGGATGTTCATGCTGGACGCCAGACGTTCCAACGTTTTGATAAGTTCA
ATGACAAATACAATCCCGTGGGTGCAAGTGAGCTTCGGGACCTCTACCTAAAAACAGACAACTACATTAA
TGGGGAGTATTTTGCCACTATCATCAAGGAGGTGGGTGCAGACCTGGTGGAGGCCAAGTATCAGCATGCA
GAGCCTCGCTTATCCATCTACGGTCGCAGTCCAGATGAGTGGAACAAACTCTCCTCTTGGTTTGTCTGCA
ATCGCATCTATTGCCCCAACATGACGTGGATGATCCAGGTCCCCAGGATCTATGATGTGTTCCGATCCAA
GAATTTCCTGCCACACTTCGGAAAGATGCTGGAGAATATTTTCCTTCCAGTGTTTGAGGCCACCATCAAC
CCCCAAGCTCACCCAGACCTCAGTGTCTTCCTCAAGCACATCACTGGCTTTGACAGTGTGGATGATGAAT
CCAAACACAGTGGTCACATGTTTTCCTCCAAGAGTCCCAAACCCGAGGAGTGGACAATGGAAAACAACCC
GTCTTATACTTACTATGCCTACTACATGTATGCAAACATCACGGTGCTCAACAGCCTGAGAAAGGAACGA
GGCATGAATACATTTCTGTTTCGTCCCCACTGTGGGGAGGCTGGGGCTCTCACTCACCTCATGACAGCCT
TCATGATAGCAGACAATATTTCTCATGGACTGAATTTAAAGAAGAGTCCTGTGCTACAGTACTTGTTTTT
CCTAGCCCAGATTCCCATCGCCATGTCACCGCTGAGTAACAACAGTCTGTTCCTCGAATATGCAAAGAAT
CCTTTCTTAGATTTCCTCCAGAAAGGCCTGATGATCTCACTGTCGACCGATGACCCGATGCAGTTCCACT
TCACCAAGGAGCCCCTGATGGAAGAATACGCCATCGCTGCGCAAGTCTTCAAGCTGAGCACGTGTGACAT
GTGTGAGGTGGCAAGGAACAGTGTCCTGCAGTGTGGGATTTCTCATGAGGAAAAAGCAAAGTTTCTGGGC
AACAATTACCTTGAGGAAGGCCCTGTTGGAAATGACATCCGGAGGACAAATGTCGCTCAGATTCGCATGG
CCTATCGTTATGAAACTTGGTGTTATGAACTCAATTTAATTGCTGAGGGTCTTAAAGCAACAGAATGA

Translation (745 aa):
MPLFKLTGQGKQIDDAMRSFAEKVFASEVKDEGGRHEISPFDVDEICPISLHEMQAHIFHMENLSMDGRR
KRRFQGRKTVNLSIPQSETSSTKLSHIEEFISSSPTYESVPDFQRVQITGDYASGVTVEDFEVVCKGLYR
ALCIREKYMQKSFQRFPKTPSKYLRNIDGEALVGNESFYPVFTPPPKKGEDPFRTEDLPANLGYHLKMKA
GVIYIYPDEAAANRDEPKPYPYPNLDDFLDDMNFLLALIAQGPVKTYAHRRLKFLSSKFQVHQMLNEMDE
LKELKNNPHRDFYNCRKVDTHIHAAACMNQKHLLRFIKKSYHIDADRVVYSTKEKSLTLKELFAKLNMHP
YDLTVDSLDVHAGRQTFQRFDKFNDKYNPVGASELRDLYLKTDNYINGEYFATIIKEVGADLVEAKYQHA
EPRLSIYGRSPDEWNKLSSWFVCNRIYCPNMTWMIQVPRIYDVFRSKNFLPHFGKMLENIFLPVFEATIN
PQAHPDLSVFLKHITGFDSVDDESKHSGHMFSSKSPKPEEWTMENNPSYTYYAYYMYANITVLNSLRKER
GMNTFLFRPHCGEAGALTHLMTAFMIADNISHGLNLKKSPVLQYLFFLAQIPIAMSPLSNNSLFLEYAKN
PFLDFLQKGLMISLSTDDPMQFHFTKEPLMEEYAIAAQVFKLSTCDMCEVARNSVLQCGISHEEKAKFLG
NNYLEEGPVGNDIRRTNVAQIRMAYRYETWCYELNLIAEGLKATE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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