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Report for CCDS17610.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17610.1 Public Mus musculus 3 Prune1 23 108 98 CCDS HistoryNCBI Gene:229589Re-query CCDS DB by CCDS ID:17610.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 17610.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000015855.7 ENSMUSP00000015855.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000015855.7Link to Ensembl Protein Viewer:ENSMUSP00000015855.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000015855Re-query CCDS DB by Protein ID:ENSMUSP00000015855
Original member Current member NCBI NM_173347.2 NP_775482.1 Accepted alive Link to Nucleotide Sequence:NM_173347.2Link to Protein Sequence:NP_775482.1Re-query CCDS DB by Nucleotide ID:NM_173347Re-query CCDS DB by Protein ID:NP_775482Link to BLAST:NP_775482.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775482.1 454 Q8BIW1 454 100% 0 0

Chromosomal Locations for CCDS 17610.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 95254996 95255427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95258027 95258185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95259240 95259334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95262211 95262369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95263592 95263776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95265418 95265620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95268231 95268323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95281585 95281623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1365 nt):
ATGGAGGACTACCTGCAGGACTGTCGAGCCGCTTTGCAGGATTCCAGGCCTCTACATGTCGTGCTGGGAA
ATGAAGCCTGCGACTTAGACTCCATGGTGTCTGCTCTCGCCTTGGCCTTCTACCTAACAAAGACGTCTGA
AGCTGAAGACATCTTTATACCAGTTTTAAATATAAAGCGTTCTGAGCTTCCTCTGCGCGGGGACAATGTC
TTCTTTCTCCAGGAGGTTAAGATTCCAGAGCCAGCCCTGATCTTCCGGGACGAGATTGACCTCCTAGCCC
TGCACCAGGCTGGCCAGCTCACCCTCATCCTTGTTGACCACCATATTTTACCCAAAAGCGATGCAGCTCT
GGAGGAGGCCGTAGCAGAGGTGCTGGACCACCGACCAATTGAGCAGAAATACTGTCCTCCCTGTCACGTT
TCAGTTGAGCTGGTGGGGTCCTGTGCCACCCTGGTGACAGAGAGAATCCTGCAGGGGGCACCAGAGACCT
TGGACAGACAAACTGCAGCCCTACTGCATGGAACCATCATCCTGGACTGTGTCAACATGGATACCAACAT
TGGGAAGGCAACCCCAAAGGACAGCAAATATGTGGAAGAACTGGAAGCCCTTTTCCCAGATCTGCCCAAA
AGAAAGGACATATTTGATTCCCTGCAGAAGGCCAAGTTTGACGTCTCAGGACTGACCACTGAACAGATGC
TCAGAAAGGACCAGAAGACAGTCTACAGACAGGGCACCAAGGTGGCAATCAGTGCAATCTACATGGACTT
GAAGGCCTTTCTGCAGCGGACAGACCTCTTCACAGATCTCAGTTCTTTCTGCCATGATCACAGCTATGAT
GCCCTGGTTGCCATGACTATCTTTTTCAACACTCAAAATGAGCCAGTACGGCAATTAGCTATCTTCTGTC
CACACGAGGCACTTCGAATGACAATCTGTGGCATCCTGGAACGATCCACCTCCCCACCCCTGAAGCTGAC
ACCTATCCCAAGCACCTCCCCTAACCTCCAGGCCTATCACCAAGGCAACACCCAGGTCTCTCGGAAGAAG
CTGCTGCCTGTGCTCCAGGAAGCCCTCTCCGCATATCTTGACTCAGCGAAGATGGCTTCGGGGCAGTCTG
AGGTAGCTGTGGGTATGTCTAGGGAGCAGGTGGACAAGGACTTGGACAAGGCAAGTAACTCCCTGATTTC
TGGGCTGAGTCAAGATGAGGAAGACCCTCCGCTGCCACCCACGCCTATGAACAGCTTGGTGGATGAGTGC
CCTCTGGATCAGGGGCTGCCTAAGTTCTCCGCTGAGGCTGTCTTTGAGAAGTGCAGTCAGATCTCACTAT
CCCAGTCTGCCAGAGCCTGCACATCAAATAAGTGA

Translation (454 aa):
MEDYLQDCRAALQDSRPLHVVLGNEACDLDSMVSALALAFYLTKTSEAEDIFIPVLNIKRSELPLRGDNV
FFLQEVKIPEPALIFRDEIDLLALHQAGQLTLILVDHHILPKSDAALEEAVAEVLDHRPIEQKYCPPCHV
SVELVGSCATLVTERILQGAPETLDRQTAALLHGTIILDCVNMDTNIGKATPKDSKYVEELEALFPDLPK
RKDIFDSLQKAKFDVSGLTTEQMLRKDQKTVYRQGTKVAISAIYMDLKAFLQRTDLFTDLSSFCHDHSYD
ALVAMTIFFNTQNEPVRQLAIFCPHEALRMTICGILERSTSPPLKLTPIPSTSPNLQAYHQGNTQVSRKK
LLPVLQEALSAYLDSAKMASGQSEVAVGMSREQVDKDLDKASNSLISGLSQDEEDPPLPPTPMNSLVDEC
PLDQGLPKFSAEAVFEKCSQISLSQSARACTSNK


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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