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Report for CCDS15044.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15044.1 Public Mus musculus 1 Tmbim1 23 108 98 CCDS HistoryNCBI Gene:69660Re-query CCDS DB by CCDS ID:15044.1Re-query CCDS DB by GeneID:69660See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15044.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000016309.15 ENSMUSP00000016309.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000016309.15Link to Ensembl Protein Viewer:ENSMUSP00000016309.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000016309Re-query CCDS DB by Protein ID:ENSMUSP00000016309
Original member Current member EBI ENSMUST00000113796.7 ENSMUSP00000109427.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113796.7Link to Ensembl Protein Viewer:ENSMUSP00000109427.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113796Re-query CCDS DB by Protein ID:ENSMUSP00000109427
Original member Current member NCBI NM_027154.5 NP_081430.3 Accepted alive Link to Nucleotide Sequence:NM_027154.5Link to Protein Sequence:NP_081430.3Re-query CCDS DB by Nucleotide ID:NM_027154Re-query CCDS DB by Protein ID:NP_081430Link to BLAST:NP_081430.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081430.3 309 Q8BJZ3-1 309 99.3528% 0 2

Chromosomal Locations for CCDS 15044.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 74289372 74289518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74289871 74289924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74290752 74290847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74291200 74291287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74291431 74291468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74291695 74291734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74292457 74292507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74292835 74292888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74293005 74293069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74293908 74294002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74295198 74295399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (930 nt):
ATGTCCAATCCCAGTGCCCCACCTCCCTATGAGGACCACAACCCCCTGTACCCTGGCTCTCCACCTCCTG
GTGGCTACGGGCAGCCATCTGTCCTGCCAGGTGGTTATCCCGCCTACCCTGCCTACCCTCAACCTGGTTA
CGGTCATCCTGCTGGCTACCCACAGCCGGTTCCTCCCGTCCATCCAATGCCCATGAACTACGGCCATGAC
TATAATGAAGAGGAGAGAGCAGGAAGTGACAGCTTTCGTCCTGGAGAATGGGATGACCGGAAAGTTCGAC
ATTCCTTCATCCAAAAGGTGTATTGCATCATTTCTGTCCAGCTGCTCATCACTGTGGCCATCATTGCAAT
CTTCACCTTTGTGGAACCAGTCGGCAAATACGTGAGGAACAATGTGGCTGTGTACTACGTGTCCTATGCT
GTCTTCCTTGTCACCTACCTGACCCTTGCCTGCTGCCAGGGACCCAGGCGCCGATTCCCATGGAACATCA
TCTTGCTCACCATCTTTACTTTGGCTTTGGGCTTTGTGACAGGCACTATTTCCAGTATGTATGAAACCAA
AGCTGTCATCATAGCAATGATCATCACCGCTGTGGTATCCATCTCTGTCACCATCTTCTGCTTTCAGACT
AAGGTGGACTTCACCTCGTGTACAGGCCTCTTCTGTGTGCTGGGAATAGTGCTGATGGTGACCGGAATTG
TCACAAGCATAGTGCTGATCTTTAAATATATTTACTGGCTCCACATGGTCTATGCAGCTCTGGGGGCCAT
CTGTTTCACCCTGTTCCTGGCTTATGACACACAGCTGGTCCTGGGGAACCGGAAGCACACCATCAGCCCG
GAGGACTACATCACAGGCGCCCTACAGATCTACACAGATATAGTCTATATCTTCACGTTCGTGCTCCAGC
TCGTAGGAAGTAGAGACTGA

Translation (309 aa):
MSNPSAPPPYEDHNPLYPGSPPPGGYGQPSVLPGGYPAYPAYPQPGYGHPAGYPQPVPPVHPMPMNYGHD
YNEEERAGSDSFRPGEWDDRKVRHSFIQKVYCIISVQLLITVAIIAIFTFVEPVGKYVRNNVAVYYVSYA
VFLVTYLTLACCQGPRRRFPWNIILLTIFTLALGFVTGTISSMYETKAVIIAMIITAVVSISVTIFCFQT
KVDFTSCTGLFCVLGIVLMVTGIVTSIVLIFKYIYWLHMVYAALGAICFTLFLAYDTQLVLGNRKHTISP
EDYITGALQIYTDIVYIFTFVLQLVGSRD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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