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Report for CCDS19528.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19528.1 Public Mus musculus 5 Ddx51 23 108 98 CCDS HistoryNCBI Gene:69663Re-query CCDS DB by CCDS ID:19528.1Re-query CCDS DB by GeneID:69663See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19528.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031478.5 ENSMUSP00000031478.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031478.5Link to Ensembl Protein Viewer:ENSMUSP00000031478.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000031478Re-query CCDS DB by Protein ID:ENSMUSP00000031478
Original member Current member NCBI NM_027156.3 NP_081432.2 Accepted alive Link to Nucleotide Sequence:NM_027156.3Link to Protein Sequence:NP_081432.2Re-query CCDS DB by Nucleotide ID:NM_027156Re-query CCDS DB by Protein ID:NP_081432Link to BLAST:NP_081432.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081432.2 639 Q6P9R1 639 100% 0 0

Chromosomal Locations for CCDS 19528.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 110653488 110653788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110653878 110654011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110654468 110654618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110654869 110655014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110655092 110655163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110655307 110655413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110655565 110655673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110655760 110655905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110656040 110656232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110656331 110656446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110656525 110656641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110656816 110656917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110657088 110657151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110657251 110657385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110657581 110657607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1920 nt):
ATGGCGCTGTTCCACATAGCGCGGTACGCGGGCCCAGAGGCCGCGGGGCAGGGGGATACGGACGCAGAGG
CGGGCAGCCGGGCTCGAGTGCTGCTCGAGCGGCTGCAGAACAGAGCCCGTGAGCGACAGCAGCGGGAGCC
GGAGCTCGAGACCACAGGAACGGCCGGGGAAGGGGAAGCGGCAGCAGCAGGCAAGCGGCGACGGCGGCCC
CGACGGCGGCGTCGGGTGAGCGGCTCGGCGACTCCGAACTCGGAGGCTCCTAGGGCGAAGCGGCGGAAAG
CGGACAAGGACGTGGACGCAGGGAGAGGTGAGGAGGCTCCGGAGGAGCTCAGTGCCGGCGCAGAGGACCC
GGGTGCGAACCCTCAGGAGGATGTCCAGAGACCCCCGGCTCCAGGCCGGGTGCTGGGGGACTTTGCAAGA
AGAAAGACGCCGAAGGTTCAGCCTTTCCTGCCAGCATGGTTGGCTAAGCCAAGCTGTGTCAAAAAGAGTG
TCACCGAAGATCTCACTCCCATTGAGGACATCCCTGAGGTTCACCCTGACCTGCAGAAGCAGTTGAGAGC
TAATGGCATCACTTCCTACTTTCCAGTCCAGGCAGCTGTGATTCCCGCCCTCCTCGAAAGTGCTGACCAT
GGGTTTCTCATAGGCAGAGGTGGCTACCAACCTAGTGACCTCTGCGTCTCTGCCCCAACGGGCAGTGGGA
AAACACTGGCCTTTGTCATCCCCGTGGTACAGGCCCTGTTGCATCGAGTGGTCTGCCACATCCGTGCACT
GGTTGTACTTCCCACTAAGGAGCTGGCCCAACAGGTGAGCAAAGTATTCAACATCTACACAGACACCACG
CCTCTGAGGGTTGCCTTGGTGACTGGACAGAAGTCGCTGGCTAAGGAGCAGGAGAGTCTTGTCCAGAAGA
CAGCAGATGGTTTCCGTTGCCTGGCCGACATTGTGGTGGCCACACCTGGCCGCTTGGTGGACCACATTGA
CCAGACTCCAGGATTCAGCCTCCAGCAGCTCCGCTTCCTGATCATTGATGAGGCTGACCGGATGATAGAC
AGCATGCACCAGTCCTGGCTGCCACGAGTGGTGGCGGCAGCCTTCTACAGTGAGGGCCCCACGGGTTCCT
GTGCCCTGCTCCAGAGGACACAGCCCCAGGCTCTGACTGCTGCCAGCACCTGTGTCCCCCAGATGCCTCT
GCAGAAGCTACTGTTCTCAGCCACACTGACCCAGGACCCCGAGAAGCTGCAGCGCCTTGGCCTCTACCAG
CCACGGCTTTTCTCCACAAGGCTGGGACAACAAAGTCCTAAAGACACAGCTGAGGTGGATGAAAACTCGG
GGAAGTACACCTTCCCCGTGGGGCTCACGCATCACTATGTGCCGTGTAGACTCAGCTCGAAGCCACTCAT
TGTCTTACACCTGGTCCTCAGGATGAGCTGCTCAAGGGCTCTTTGCTTCACCAACTCCCGAGAAAACTCC
CACAGGCTGTACCTATTAGCACAAGCTTTTGGGGGTGTGAGTGTGGCTGAATTCTCCTCCCGCTATGGGC
CTGGCCAAAGGAAGAAAATCTTGAAGCAGTTTGAACAAGGAAAGATCCAGCTCCTTATCAGCACAGATGC
TACTGCTCGAGGCATTGATGTGCAGGGTGTGGAGCTGGTGATCAACTACGATGCCCCACAATATCTGAGG
ACCTATGTGCACAGGGTCGGGAGAACAGCTCGAGCCGGGAAAACTGGACAGGCATTCACACTTCTCTTGA
AAGTGCAGGAAAGGAAGTTCCTTCAGATGGTGTCAGAAGCTGGGGTGCCTGAGCTGACACACCATGAGAT
CCCCAGGAAGCTCCTGCAGCCGCTGGTTGCTCGTTATGAGACAGCCTTGTCTCAGTTGGAGAAAACTGTC
AAGGAGGAGCAGAAACTGAAGGCAGCCTAG

Translation (639 aa):
MALFHIARYAGPEAAGQGDTDAEAGSRARVLLERLQNRARERQQREPELETTGTAGEGEAAAAGKRRRRP
RRRRRVSGSATPNSEAPRAKRRKADKDVDAGRGEEAPEELSAGAEDPGANPQEDVQRPPAPGRVLGDFAR
RKTPKVQPFLPAWLAKPSCVKKSVTEDLTPIEDIPEVHPDLQKQLRANGITSYFPVQAAVIPALLESADH
GFLIGRGGYQPSDLCVSAPTGSGKTLAFVIPVVQALLHRVVCHIRALVVLPTKELAQQVSKVFNIYTDTT
PLRVALVTGQKSLAKEQESLVQKTADGFRCLADIVVATPGRLVDHIDQTPGFSLQQLRFLIIDEADRMID
SMHQSWLPRVVAAAFYSEGPTGSCALLQRTQPQALTAASTCVPQMPLQKLLFSATLTQDPEKLQRLGLYQ
PRLFSTRLGQQSPKDTAEVDENSGKYTFPVGLTHHYVPCRLSSKPLIVLHLVLRMSCSRALCFTNSRENS
HRLYLLAQAFGGVSVAEFSSRYGPGQRKKILKQFEQGKIQLLISTDATARGIDVQGVELVINYDAPQYLR
TYVHRVGRTARAGKTGQAFTLLLKVQERKFLQMVSEAGVPELTHHEIPRKLLQPLVARYETALSQLEKTV
KEEQKLKAA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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