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Report for CCDS35609.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35609.1 Public Mus musculus 1 Smarcal1 23 108 98 CCDS HistoryNCBI Gene:54380Re-query CCDS DB by CCDS ID:35609.1Re-query CCDS DB by GeneID:54380See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35609.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047615.14 ENSMUSP00000047589.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047615.14Link to Ensembl Protein Viewer:ENSMUSP00000047589.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000047615Re-query CCDS DB by Protein ID:ENSMUSP00000047589
Original member Current member EBI ENSMUST00000152225.1 ENSMUSP00000137833.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000152225.1Link to Ensembl Protein Viewer:ENSMUSP00000137833.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000152225Re-query CCDS DB by Protein ID:ENSMUSP00000137833
Original member Current member NCBI NM_018817.2 NP_061287.2 Accepted alive Link to Nucleotide Sequence:NM_018817.2Link to Protein Sequence:NP_061287.2Re-query CCDS DB by Nucleotide ID:NM_018817Re-query CCDS DB by Protein ID:NP_061287Link to BLAST:NP_061287.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061287.2 910 Q8BJL0-1 910 100% 0 0

Chromosomal Locations for CCDS 35609.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 72585696 72586404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72587051 72587101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72591063 72591275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72591825 72591875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72595788 72595974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72597379 72597529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72598771 72598929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72601369 72601434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72611295 72611435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72612809 72613024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72616508 72616578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72620032 72620134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72626463 72626645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72628101 72628201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72629375 72629471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72632821 72633054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2733 nt):
ATGTCCTTGCCACTTACAGAGGAGCAGAGGAAAAAGATTGAAGAGAATCGGCAAAAAGCTTTGGCCCGTC
GAGCTGAGAAGTTGTCAGAACAGCCACAGAGCGCAGCTTCAGGCTCCTCTGCTGCCGGCCCGTCCCAGTC
CAAGCAGGGCTCTCTCCTGAATCTCCTAGCGGAGCCTTCAAAGCCAGTGGGCCATGCCTCCATTTTCAAG
CAACAGAATCTCAGTAATTCATTTCCTACTGATCAGAGACCTCACAGCTCCCGCTGTTCTCAGCCCAGCC
CAGCAGAGGAAACGACGGGGCTATGGAAGACCCAAGGAGAGATGTCCACAGCCTGCCCAAAGCCTAACCC
AAGTCCTCCAGGAGCCTCTAACCAACCACTTTTGGGTTATAAATCCAGCGAGGGTCAACCCCAGGCAACC
TGGGACACAGGAGCTTCCTCTTCTGGACCATTCCCCAGGGACCCCGAGTTAGAGGCCAAGGCAGCAAGGC
CTTCCACCTCTAGGCAGAGCATTTCGGACAGCTTTTATGTGTTAGGGGGAAAAACACCTAGGACAGAAGG
GAGACCCCCAAACATACTGCAAACCACACCCCAAAACACAGGCTTTCTACGGGGAGCGTGCATAAAGACT
GGGGATCGCTTCCGGGTAAAGATCGGCTACAACCAAGAGCTCATTGCCGTGTTTAAGTCTCTGCCCAGCA
GACACTATGATTCTTTTACAAAGACCTGGGACTTCAGCATGAGCGACTACAGAGCCTTGATGAAGGCAGT
CGAGCGACTCTCCACGGTCTCCCTGAAGCCACTGGACGAGGCTGGTGGCAGTGTTGGAGGACAGACCAGC
CTTCCCTCAGCTCCATCCCTGACCTTTGTGACAGGGAAGTGCATGCTCATCTCTCGAGTCCGCTTCGAGG
TTGACATCGGCTATTCGGAGGCGGTGATTGGCCTGTTTAAACAGATGGAGTCCAGGAGTTACGATATCAA
GACCAGGAAGTGGAGTTTTCTCTTGGAAGAGCACAATAAACTAATTGCAAGGTCACGTGAACTGAAGCAA
GTTCAGCTGGACCCACTGCCCAAGACAGTGACCCTGGCATTTGCATCTCAGCTGGAGAAAACGTCTCCCA
AACTGAAAGCAGACGTGCCAGAAGCGGACCTTTCCGGAGTGGATGCCAAGCTTGTGTCTAGCCTCATGCC
CTTTCAGAGGGAGGGAGTTAGCTTTGCCATATCAAAAAGAGGCCGCCTGCTACTTGCCGATGACATGGGC
CTAGGGAAGACCGTCCAAGCCATCTGCATAGCAGCTTTTTACCGAAAGGAATGGCCACTGCTGGTGGTCG
TGCCTTCCTCTGTGCGCTTCACCTGGGAGCAGGCCTTTCTTCGGTGGCTTCCATCTCTTAGCCCAGAGAA
CATCAACGTGGTGGTGACCGGGAAGGGCCGCCTAACAGCTGGCTTGGTCAATATTGTCAGCTTTGACCTC
CTTTGCAAGTTGGAGAGGCAGCTAAAAACCCCTTTCAAAGTCGTCATTATTGATGAATCACACTTCCTCA
AGAACATAAAGACTGCCCGCTGCCGAGCAGCTGTGCCTATCCTAAAGGTTGCCAAGAGGGTGATCCTACT
GTCAGGCACACCCGCCATGTCTCGGCCCGCAGAGCTCTACACGCAGATCATTGCTGTCAAGCCAACCTTC
TTCCCTCAGTTTCATGCCTTTGGACTCCGCTACTGTGACGCCAAACGGCTCCCTTGGGGCTGGGACTACT
CAGGCTCCTCCAACCTGGGCGAGCTGAAGCTGCTGCTAGAGGAAGCAATCATGCTGCGGCGCCTCAAATC
CGACGTGCTCTCCCAGCTTCCGGCCAAGCAGCGCAAGATGGTGGTGGTCAACCCTGGTCGGATCAGCTCC
AGGGCTAAGGCAGCCCTGGATGCAGCAGCCAAAGAAATGACCAAGGACAAAACTAAACAGCAACAGAAAG
AAGCTCTCCTTGTCTTCTTCAACAGAACAGCAGAAGCTAAAATCCCATGTGTCGTCGAGTATATCCTGGA
CCTTCTGGACAGCGGACGAGAGAAGTTTCTAGTGTTTGCACACCATAAGGTGATTCTGGATGCAGTTGCC
AAGGAGCTCGAGAGGAAGAACGTTCAACACATCCGGATCGATGGCTCCACTCCCTCAGCAGACCGGGAGG
CTCAGTGCCAGCGGTTCCAGCTGTCCAAAGGGCACACAGTGGCACTGTTGTCCATCACAGCCGCCAACAT
GGGCCTCACCTTCTCCACAGCTGATCTGGTCGTGTTTGCTGAGCTCTTCTGGAACCCAGGGGTGCTGATC
CAGGCCGAGGACCGTGTGCACCGCATTGGACAGACAAACTCTGTGAGCATCCACTACCTGGTGGCAAAAG
GCACAGCAGATGACTACCTTTGGCCTCTGATTCAAGAGAAGATTAAAGTTCTGGGGGAAGCTGGGCTTTC
TGAGACCAATTTCTCGGAAATGACGGAAGCTACAGACTACGTGCACAAGGACCCAAAGCAGAAGACGATC
TATGACCTGTTCCAGCAGTCCTTTGAAGACGATGGAAATGACATGGAATTCCTGGAAGCAGCAGAGTCCT
TTGAGCTAGGAAGTACTTCAGGAACCTCTGGAAACATTTCCCAGGATCTGGGAGATCTCTTAGATGAAGA
CGAAGGCAGTCCGCCAAAGAAAAGCAGATTTGAATTCTTTGATAATTGGGACAGCTTTTCCTCTCCCTTT
TGA

Translation (910 aa):
MSLPLTEEQRKKIEENRQKALARRAEKLSEQPQSAASGSSAAGPSQSKQGSLLNLLAEPSKPVGHASIFK
QQNLSNSFPTDQRPHSSRCSQPSPAEETTGLWKTQGEMSTACPKPNPSPPGASNQPLLGYKSSEGQPQAT
WDTGASSSGPFPRDPELEAKAARPSTSRQSISDSFYVLGGKTPRTEGRPPNILQTTPQNTGFLRGACIKT
GDRFRVKIGYNQELIAVFKSLPSRHYDSFTKTWDFSMSDYRALMKAVERLSTVSLKPLDEAGGSVGGQTS
LPSAPSLTFVTGKCMLISRVRFEVDIGYSEAVIGLFKQMESRSYDIKTRKWSFLLEEHNKLIARSRELKQ
VQLDPLPKTVTLAFASQLEKTSPKLKADVPEADLSGVDAKLVSSLMPFQREGVSFAISKRGRLLLADDMG
LGKTVQAICIAAFYRKEWPLLVVVPSSVRFTWEQAFLRWLPSLSPENINVVVTGKGRLTAGLVNIVSFDL
LCKLERQLKTPFKVVIIDESHFLKNIKTARCRAAVPILKVAKRVILLSGTPAMSRPAELYTQIIAVKPTF
FPQFHAFGLRYCDAKRLPWGWDYSGSSNLGELKLLLEEAIMLRRLKSDVLSQLPAKQRKMVVVNPGRISS
RAKAALDAAAKEMTKDKTKQQQKEALLVFFNRTAEAKIPCVVEYILDLLDSGREKFLVFAHHKVILDAVA
KELERKNVQHIRIDGSTPSADREAQCQRFQLSKGHTVALLSITAANMGLTFSTADLVVFAELFWNPGVLI
QAEDRVHRIGQTNSVSIHYLVAKGTADDYLWPLIQEKIKVLGEAGLSETNFSEMTEATDYVHKDPKQKTI
YDLFQQSFEDDGNDMEFLEAAESFELGSTSGTSGNISQDLGDLLDEDEGSPPKKSRFEFFDNWDSFSSPF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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