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Report for CCDS17526.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17526.1 Public Mus musculus 3 Gatad2b 23 108 98 CCDS HistoryNCBI Gene:229542Re-query CCDS DB by CCDS ID:17526.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17526.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049382.5 ENSMUSP00000041370.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049382.5Link to Ensembl Protein Viewer:ENSMUSP00000041370.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000049382Re-query CCDS DB by Protein ID:ENSMUSP00000041370
Original member Current member EBI ENSMUST00000199754.4 ENSMUSP00000142514.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000199754.4Link to Ensembl Protein Viewer:ENSMUSP00000142514.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000199754Re-query CCDS DB by Protein ID:ENSMUSP00000142514
Original member Current member EBI ENSMUST00000199607.4 ENSMUSP00000142617.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000199607.4Link to Ensembl Protein Viewer:ENSMUSP00000142617.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000199607Re-query CCDS DB by Protein ID:ENSMUSP00000142617
Original member NCBI NM_139304.2 NP_647465.1 Updated not alive Link to Nucleotide Sequence:NM_139304.2Link to Protein Sequence:NP_647465.1Re-query CCDS DB by Nucleotide ID:NM_139304Re-query CCDS DB by Protein ID:NP_647465
Current member NCBI NM_139304.3 NP_647465.1 Accepted alive Link to Nucleotide Sequence:NM_139304.3Link to Protein Sequence:NP_647465.1Re-query CCDS DB by Nucleotide ID:NM_139304Re-query CCDS DB by Protein ID:NP_647465Link to BLAST:NP_647465.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_647465.1 594 Q8VHR5-1 594 100% 0 0

Chromosomal Locations for CCDS 17526.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 90341657 90341994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90348567 90348696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90349355 90349486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90350387 90350518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90351404 90351574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90351814 90352129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90354308 90354510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90355675 90355785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90356131 90356248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90357869 90358002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1785 nt):
ATGGATAGAATGACAGAAGATGCTCTGCGCCTGAATCTTTTGAAGAGGAGTTTGGACCCAGCAGATGAGC
GAGATGATGTTCTGGCAAAACGACTGAAAATGGAGGGGCATGAGGCCATGGAACGGCTGAAAATGTTAGC
ACTGCTCAAAAGGAAAGATTTGGCAAATCTTGAGGTGCCGCATGAGTTACCTACTAAGCAAGATGGCAGT
GGTGTCAAGGGTTATGAAGAGAAACTTAATGGAAATCTCAGGCCTCATGGAGACAACAACAGGACTGCTG
GAAGGCCCGGCAAAGAAAACATCAATGATGAGCCTGTGGATATGAGTGCTAGACGGAGTGAGCCAGACCG
AGGAAGGCTAACTCCTTCCCCAGACATAATTGTTTTGTCTGATAATGAGGCCTCCAGTCCCCGATCCAGC
TCCCGGATGGAAGAGAGACTCAAAGCAGCCAACCTAGAGATGTTTAAGGGGAAAGGCATGGAGGAGCGGC
AGCAGCTTATCAAGCAACTGAGGGACGAGCTACGATTGGAAGAAGCTCGCCTGGTGCTGCTAAAGAAACT
GAGACAGAGTCAGCTACAGAAAGAGAATGTGGTCCAAAAGACTCCAGTTGTACAGAATGCAGCATCTATT
GTTCAGCCATCTCCTGCACATGTGGGACAACAAGGCTTATCTAAGCTTCCCTCCCGACCCGGGGCTCAAG
GAATTGAACCTCAAAATATGAGAACATTACAGGGTCACAGTGTCATCCGTTCAGCAACCAACACCACCCT
TCCACACATGTTGATGTCTCAACGTGTTATTGCACCAAATCCAGCCCAACTTCAGGGCCAGCGGGGTCCA
CCGAAGCCTGGCATTGTACGCACCACAACACCTAACATGAATCCTGCCATCAGCTACCAACCACAGTCAA
GTTCGTCTGTTCCTTGTCAGCGCACAACGTCTTCTGCCATCTATATGAACCTTGCCTCCCATATCCAACC
AGGGACTGTGAACAGAGTGTCCTCACCACTTCCTAGCCCCAGTGCCATGAGTGACGCTGCCAACTCACAG
GCTGCAGCCAAGTTGGCCCTTCGAAAACAGCTGGAAAAGACGCTCCTGGAGATACCACCTCCAAAGCCTC
CTGCTCCCTTGCTTCACTTCCTGCCTAGTGCAGCCAATAGCGAGTTTATCTACATGGTAGGCTTGGAAGA
AGTTGTACAGAGTGTCATTGACAGCCAAGGCAAAAACTGTGCCTCACTTCTGAGGGTCGAACCCTTTGTA
TGTGCCCAGTGCCGCACAGATTTCACCCCTCACTGGAAGCAAGAAAAGAATGGTAAGATCCTCTGTGAGC
AGTGTATGACTTCCAACCAGAAAAAGGCTCTAAAAGCTGAACACACTAACCGGCTGAAAAACGCTTTCGT
TAAAGCCCTACAGCAGGAACAGGAAATTGAACAGCGATTACAGCAGCAGGCAGCACTCTCCCCAACGACA
GCTCCAGCTGTATCCAGTGTCAGTAAACAGGAGACCATCATGAGACATCATACACTGCGGCAGGCTCCAC
AGCCCCAGAGCAGCCTCCAGCGTGGTATACCCACATCTGCCCGATCCATGCTTTCAAACTTTGCACAGGC
ACCCCAATTGTCTGTGCCAGGTGGCCTCCTTGGTATGCCAGGTGTCAACATTGCATACTTGAACACTGGC
ATCGGAGGACATAAAGCCCCAAGTTTGGCAGACCGGCAGCGTGAATACCTTTTAGACATGATCCCTCCCA
GGTCTATATCGCAGTCCATCAGTGGGCAGAAATAA

Translation (594 aa):
MDRMTEDALRLNLLKRSLDPADERDDVLAKRLKMEGHEAMERLKMLALLKRKDLANLEVPHELPTKQDGS
GVKGYEEKLNGNLRPHGDNNRTAGRPGKENINDEPVDMSARRSEPDRGRLTPSPDIIVLSDNEASSPRSS
SRMEERLKAANLEMFKGKGMEERQQLIKQLRDELRLEEARLVLLKKLRQSQLQKENVVQKTPVVQNAASI
VQPSPAHVGQQGLSKLPSRPGAQGIEPQNMRTLQGHSVIRSATNTTLPHMLMSQRVIAPNPAQLQGQRGP
PKPGIVRTTTPNMNPAISYQPQSSSSVPCQRTTSSAIYMNLASHIQPGTVNRVSSPLPSPSAMSDAANSQ
AAAKLALRKQLEKTLLEIPPPKPPAPLLHFLPSAANSEFIYMVGLEEVVQSVIDSQGKNCASLLRVEPFV
CAQCRTDFTPHWKQEKNGKILCEQCMTSNQKKALKAEHTNRLKNAFVKALQQEQEIEQRLQQQAALSPTT
APAVSSVSKQETIMRHHTLRQAPQPQSSLQRGIPTSARSMLSNFAQAPQLSVPGGLLGMPGVNIAYLNTG
IGGHKAPSLADRQREYLLDMIPPRSISQSISGQK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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