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Report for CCDS17485.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17485.1 Public Mus musculus 3 Msto1 23 108 98 CCDS HistoryNCBI Gene:229524Re-query CCDS DB by CCDS ID:17485.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17485.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000126245.1 ENSMUSP00000115645.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000126245.1Link to Ensembl Protein Viewer:ENSMUSP00000115645.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000126245Re-query CCDS DB by Protein ID:ENSMUSP00000115645
Original member Current member NCBI NM_144898.2 NP_659147.2 Accepted alive Link to Nucleotide Sequence:NM_144898.2Link to Protein Sequence:NP_659147.2Re-query CCDS DB by Nucleotide ID:NM_144898Re-query CCDS DB by Protein ID:NP_659147Link to BLAST:NP_659147.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659147.2 556 Q2YDW2-1 556 99.6403% 0 2

Chromosomal Locations for CCDS 17485.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 88909696 88909910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88910130 88910239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88910314 88910418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88910626 88910810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88910883 88911014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88911287 88911439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88911537 88911671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88911764 88911881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88912026 88912113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88912237 88912300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88912703 88912778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88912858 88912927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88913567 88913702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88913793 88913876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1671 nt):
ATGGCGGGCGGGGCCCGCGAGGTGCTCACGCTGCAGTTGGGACATTTCGCGGGTTTCGTGGGGGCGCACT
GGTGGAACCAGCAGGATGCTGCGCTGGGACGCATGGCCGAGGACGAAGAGTCGCCAGGCGAGCTGTGCCC
CGACGTCTTGTACAGAACAGGCCGGACACTGCATGGCCAGGAAACCTATACGCCTCGACTCATCCTAATG
GATCTGAAAGGTAGTCTGAACACTCTAAAAGAAGAAGGTAACCTCTACAGAGACCGACAGCTAGAGGCTG
CAGTAGCGTGGCAGGGGAAGCTCAGCACACACAGAGATGACGCCCAACCAAAGAACCCAAACCTCCAGGG
CCTTCTGAGTGCAGAGGGAGTGCGGAGTAGTGACGGTGCCTGGAGGGCCAAACTGATTCAGAATATCCAA
AATGGCAAAGAGAACAGCATCAAAGTCTGGTCAGACTTCCTCAGAGTCCATCTCCATCCACGGAGCATCT
GTGTGATCCACAAGTACCACCATGATGGGGAGACAGGCCGGCTGGAGGCTTTTGGCCAAGGGGAGAGTGT
CCTGAAGGAGCCCAGGTACTTGGAAGAGCTGGAGGACAGACTACACTTCTATGTGGAGGAATGTGACTAC
TTGCAGGGCTTCCAGCTCCTGTGTGACCTGCACGATGGCTTCTCTGGAGTAGGTGCTAAAACTGCAGAGC
TACTACAAGACGAGTATGCAGGGCGGGGAGTCCTAACCTGGGGCCTGCTCCCGGGCCCCTACAGTCTTGG
GGAGCCTCAGAAAAACATCTATCGTCTCTTAAACACGGCATTTGGTCTGGTGCACCTGACTGGATACAGC
TCCTTCGTCTGTCCCTTATCCCTTGGAGGGAACCTGGGCCTGCGACCCAAGCCGCCTGTCAACTTCCCTT
CCCTACATTATGATGCCACTCTGCCCTTCCACTGTAGCGCCATCCTGGCGACAGCGCTGGACACGGTGAC
TGTTCCCTATCGCCTGCGCTCCTCAATGGTTACCATGGCTCACTTGGCTGATGTGCTAAGTTTCTCTGGG
AAAAAGGTGGTGACAGCAGAAGCAATCATCCCCTTCCCACTGGTTCGAGGCCAGTCCCTTCCTGACATCC
TGACGCAGCTTGGAGAAGCCACCCCATGGACCTCCCTGTCGGCATGCGGGGATTCTGCTGGACATCGGTG
CTTTGCCCAGTCTGTGGTGCTCAGAGGCATAGACAGAGCTAGCCACACCAGTAAGCTCAACCCAGGGACA
CCTCTGCCCTCTGCTCTCCACGCATGCGCCTCTGGAGAAGAAGTCTTGGCCCAGTACTTACAGCAGCAGC
ATCCTAGAGTCTTGAGTTCGTCACATCTGCTGCTGACTCCCTGCAAAGTGGCTCCTCCATACCCACACTT
CTTCTCAAGCTTCAGTCAGAAAGGGCTGGCCATGGACAGTACCCCCAAGGGCGCAGCAGTACAGAGCATC
CCTGTGTTTGGGGCCTTGCGTTCAACTTCATCCTTGCACCGTACGCTGGGAGACTTGGCTGAAGAGCTCA
GCAGACTTGACCTGCGGCGCTGGGCTAGCTTCATGGACGCTGGCGTGGAGCAGGATGACATGGAAGAGAT
GCTGCACGAGTTACACAGGTTGGCCCAGTGTTACCAGGAGGGTGACAGTCTCTCGAACTGA

Translation (556 aa):
MAGGAREVLTLQLGHFAGFVGAHWWNQQDAALGRMAEDEESPGELCPDVLYRTGRTLHGQETYTPRLILM
DLKGSLNTLKEEGNLYRDRQLEAAVAWQGKLSTHRDDAQPKNPNLQGLLSAEGVRSSDGAWRAKLIQNIQ
NGKENSIKVWSDFLRVHLHPRSICVIHKYHHDGETGRLEAFGQGESVLKEPRYLEELEDRLHFYVEECDY
LQGFQLLCDLHDGFSGVGAKTAELLQDEYAGRGVLTWGLLPGPYSLGEPQKNIYRLLNTAFGLVHLTGYS
SFVCPLSLGGNLGLRPKPPVNFPSLHYDATLPFHCSAILATALDTVTVPYRLRSSMVTMAHLADVLSFSG
KKVVTAEAIIPFPLVRGQSLPDILTQLGEATPWTSLSACGDSAGHRCFAQSVVLRGIDRASHTSKLNPGT
PLPSALHACASGEEVLAQYLQQQHPRVLSSSHLLLTPCKVAPPYPHFFSSFSQKGLAMDSTPKGAAVQSI
PVFGALRSTSSLHRTLGDLAEELSRLDLRRWASFMDAGVEQDDMEEMLHELHRLAQCYQEGDSLSN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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