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Report for CCDS17441.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17441.1 Public Mus musculus 3 Gatb 23 108 98 CCDS HistoryNCBI Gene:229487Re-query CCDS DB by CCDS ID:17441.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17441.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000127348.7 ENSMUSP00000119949.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000127348.7Link to Ensembl Protein Viewer:ENSMUSP00000119949.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000127348Re-query CCDS DB by Protein ID:ENSMUSP00000119949
Original member NCBI NM_144896.4 NP_659145.1 Updated not alive Link to Nucleotide Sequence:NM_144896.4Link to Protein Sequence:NP_659145.1Re-query CCDS DB by Nucleotide ID:NM_144896Re-query CCDS DB by Protein ID:NP_659145
Current member NCBI NM_144896.5 NP_659145.1 Accepted alive Link to Nucleotide Sequence:NM_144896.5Link to Protein Sequence:NP_659145.1Re-query CCDS DB by Nucleotide ID:NM_144896Re-query CCDS DB by Protein ID:NP_659145Link to BLAST:NP_659145.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659145.1 557 Q99JT1 557 100% 0 0

Chromosomal Locations for CCDS 17441.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 85574144 85574319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 85575864 85576014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 85601860 85601973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 85604381 85604579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 85605015 85605137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 85611352 85611465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 85613463 85613547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 85616615 85616659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 85618824 85619013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 85636924 85637057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 85644970 85645048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 85652281 85652415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 85653724 85653852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1674 nt):
ATGGCGGCGCCCATGCTGCGCTTGGGTTTCCCTGGAAGACGCTGGGCTTTAACATGGCTAGATGGCGGTT
CCCGCCACCGAAGTGGCTCTCAGACTGGGCCCACATCCAACTGGGCTAGGAGACAGAGTTCAGTGGCTCA
GCCTTCCCTCCACACGGCTCAGAAGCCGAGGAAAGGTGAACACAAATGGGCAGCTGTAGTAGGACTGGAA
ATTCATGCACAGATTTCCTCCAACTCTAAACTCTTCTCTGGAGCTCAAGTGTGCTTTGCAGCACCTCCAA
ATTCTCTGGTTTCTTATTTTGATGCATCTCTGCCTGGAACATTACCGGTTCTCAACAGGAGGTGTGTGGA
AGCCGCGGTGATGACTGGCTTGGCACTGAACTGCCACATAAACAAGAAGTCCTTGTTTGACCGGAAGCAC
TACTTCTACTCAGACCTTCCTGCTGGCTACCAGATCACCCAGCAGAGGCTCCCAATTGCTGCCAATGGAC
ACTTGACCTACTGTATCTATCTAGGGAAGAAACCCAGTCAGGTGACCACCAAGACAGTGAGGATCAAGCA
GATCCAGTTGGAGCAGGACAGTGGCAAAAGCCTCCATGACGACCTGAGGTCACAGACACTCATTGATTTG
AACAGAGCCGGAATTGGCCTTCTTGAAGTGGTCCTGGAGCCTGACCTGTGCTGTGGAGAAGAGGCAGCCC
TAGCTGTCAGGGAACTGCAGCTGATCCTTCAAGCCCTGGGCACCAGCCAAGCCAACATGGCAGAGGGTCA
GCTGAGAGTGGATGCCAATATATCTGTACATCACCCTGGGGAACCACTGGGTGTCAGGACTGAGGTAAAG
AATCTCAACAGCCTCAGGTTCTTGGCCAAAGCCATAGATTATGAAATTCAGAGGCAAATCACTGAACTTG
AGAATGGAGGTGAAATTCTGAATGAAACTCGTTCATTTGATTATAAGCTGGGGTGCACCATGCCAATGAG
AGACAAGGAAGGGAAACAAGACTACAGGTTTATGCCAGAGCCCAACCTGCCTCCCTTAGTGCTCTACGAT
GACACATCTCTGCCACGAGGTGCAGACTCTCAGCAGGTGATCAATATTGACCAGCTTCGGGACATGCTCC
CGGAGCTCCCCAGTGCAACCAGAGAAAGGCTGGTCCAGCAGTATGGGATGCTTCCCGAGCACAGCTTTGC
GTTACTGAATGAAGTTGGCCTACTGGAGTTCTTCCAGAATGTGATAAAAGAAACTAGGACAGAGCCAAAA
AAGGTGACTAACTGGGTCCTGAACACTTTTCTGTGCTATTTAAAGCAACAGAATCTTGCAGTCAGTGAGA
GTCCTGTCACACCCTCTGCACTTGCTGAGCTCCTCAACCTGCTGGACAGGAAAGCAATTTCTTCATCGGC
AGCTAAGCAGGTGTTTGAGGAGCTGTGGAAGGGGGAGGGGAAGACAGCAGCACAGATCGTGTCAGAACAG
CAGCTGGAGCTGATGCAGGATCAAGAGGCCCTGGAAAAGCTCTGCCAGACCACCATAGATGGACACCCCC
AAGTGGTGATGGATGTGAAGAAAAGAAACCCCAAAGCTATAAATAAGCTGATTGGGTTGGTGCGGAAGGC
AAGCCACAGCAGGGCAGACCCGGCTCTGATAAAGAAAATATTGGAGAGGAAGCTGTCATTGTGA

Translation (557 aa):
MAAPMLRLGFPGRRWALTWLDGGSRHRSGSQTGPTSNWARRQSSVAQPSLHTAQKPRKGEHKWAAVVGLE
IHAQISSNSKLFSGAQVCFAAPPNSLVSYFDASLPGTLPVLNRRCVEAAVMTGLALNCHINKKSLFDRKH
YFYSDLPAGYQITQQRLPIAANGHLTYCIYLGKKPSQVTTKTVRIKQIQLEQDSGKSLHDDLRSQTLIDL
NRAGIGLLEVVLEPDLCCGEEAALAVRELQLILQALGTSQANMAEGQLRVDANISVHHPGEPLGVRTEVK
NLNSLRFLAKAIDYEIQRQITELENGGEILNETRSFDYKLGCTMPMRDKEGKQDYRFMPEPNLPPLVLYD
DTSLPRGADSQQVINIDQLRDMLPELPSATRERLVQQYGMLPEHSFALLNEVGLLEFFQNVIKETRTEPK
KVTNWVLNTFLCYLKQQNLAVSESPVTPSALAELLNLLDRKAISSSAAKQVFEELWKGEGKTAAQIVSEQ
QLELMQDQEALEKLCQTTIDGHPQVVMDVKKRNPKAINKLIGLVRKASHSRADPALIKKILERKLSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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