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Report for CCDS38285.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38285.1 Public Mus musculus 2 Asxl1 23 108 98 CCDS HistoryNCBI Gene:228790Re-query CCDS DB by CCDS ID:38285.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38285.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109790.1 ENSMUSP00000105413.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109790.1Link to Ensembl Protein Viewer:ENSMUSP00000105413.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109790Re-query CCDS DB by Protein ID:ENSMUSP00000105413
Original member Current member NCBI NM_001039939.2 NP_001035028.1 Accepted alive Link to Nucleotide Sequence:NM_001039939.2Link to Protein Sequence:NP_001035028.1Re-query CCDS DB by Nucleotide ID:NM_001039939Re-query CCDS DB by Protein ID:NP_001035028Link to BLAST:NP_001035028.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035028.1 1514 P59598 1514 100% 0 0

Chromosomal Locations for CCDS 38285.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 153346334 153346390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153352189 153352271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153354650 153354652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153357070 153357178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153391529 153391649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153391725 153391822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153392841 153392934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153393349 153393501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153393624 153393787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153393882 153393978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153396732 153396837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153397376 153398000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153399239 153402073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4545 nt):
ATGAAGGACAAACAGAAGAGGAAGAAGGAGCGCACGTGGGCCGAGGCCGCGCGCCTGGTGTTAGAAAACT
ACTCAGATGCTCCAATGACACCAAAACAGATTCTGCAGGTCATAGAGGCAGAAGGACTGAAGGAAATGAG
AAGTGGGACATCCCCTCTTGCGTGCCTCAATGCCATGCTACATTCCAACTCAAGAGGAGGAGAAGGGCTG
TTTTATAAATTACCTGGCCGCATTAGTCTTTTCACACTCAAGAAAGATGCAGTGCAGTGGTCTAGAAATG
CAGCTACAGTGGATGGAGACGAGCCAGAGGACTCCGCTGATGTGGAAAGCTGTGGGTCTAATGAAGCCAG
CACTGTGAGTGGTGAAAATGATGTATCTCTGGATGAAACATCTTCAAATGCATCCTGCTCTACAGAGTCT
CAGAGCCGACCCCTCTCCAATCCCAGGGACAGCCACAGGGCTTCCTCACAGGCAAACAAACAGAAGAAAA
GGACTGGGGTTATGCTACCTCGTGTTGTCCTGACTCCTCTGAAGGTAAACGGGGCCCACGTGGAACCTGC
GTCAGGATTCTCAGGCCGCCACGCAGATGGCGAGAGTGGCAGTCCATCGAGCAGCAGCAGCGGTTCTCTG
GCCTTGGGCAACAGTGCCATTCGAGGCCAGGCCGAGGTCACTCGGGACCCTGCCCCCCTCTTAAGAGGCT
TCCGGAAGCCAGCCACAGGGCAAATGAAGCGCAACAGAGGGGAAGAGGTAGATTTTGAGACGCCTGGGTC
CATTCTTGTTAACACCAACCTCCGTGCTCTGATAAACTCTCGGACCTTCCATGCCCTGCCACTACACTTC
CAGCAGCAACTCCTCCTCCTCCTGCCTGAAGTGGACAGACAGGTGGGGACAGATGGCCTGCTGCGCCTCA
GCGGCAGTGCACTCAATAATGAGTTTTTCACCCATGCAGCTCAGAGCTGGCGAGAACGCCTTGCTGATGG
TGAATTCACTCATGAGATGCAAGTCAGGCTAAGACAGGAAATGGAAAAGGAGAAGAAGGTGGAACAATGG
AAGGAAAAGTTCTTTGAAGATTACTACGGACAGAAATTGGGTTTGACCAAAGAAGAATCACTGCAGCAGA
AAGAGGTCCAGGAGGAGGCCAAAGTCAAGAGTGGTTTATGTGTCTCTGGAGAGTCTGTGCGGCCGCAGCG
TGGGCCCAACACCCGTCAACGGGACGGACATTTTAAGAAACGTTCTCGGCCAGATCTCCGAACCAGATCC
AGAAGGAATATATACAAAAAACAGGAGCCAGAACAAGCAGGGGTTGCTAAAGATGCAAGTGCTGCACCAG
ACGTCTCACTCTCTAAAGATACTAAAACCGACTTAGCAGGGGTGAACAGTACCCCTGGGCCAGATGTGTC
CTCAGCAACATCTGGACAGGAGGGTCCCAAGTGTCCCAGTGAACCTGTGGCTTCCCAGATCCAAGCAGAA
AGGGACAACTTGGCATGTGCCTCTGCATCTCCAGACAGAATCCCTACCTTACCTCAGGACACTGTGGATC
AAGAGACAAAGGATCAGAAGAGAAAATCCTTTGAGCAGGAAGCCTCTGCATCCTTTCCCGAAAAGAAACC
CCGGCTTGAAGATCGTCAGTCCTTTCGTAACACAATTGAAAGTGTTCACACCGAAAAGCCACAGCCCACT
AAAGAGGAGCCCAAAGTCCCGCCCATCCGGATTCAACTTTCACGTATCAAACCACCCTGGGTGGCTAAAG
GTCGGCCCACTTACCAGATATGCCCCCGGATCGTCCCCATCACGGAGTCCTCCTGCCGGGGTTGGACTGG
TGCCAGGACCCTCGCAGACATTAAAGCCCGTGCTTTGCAGGCCCGAGGGGCGAGAGGTTACCACTGCAAT
CGAGAGACGGCCACCACTGCCATCGGAGGGGGGGGTGGCCCGGGTGGAGGTGGCAGTGGGGCCATCGATG
AGGGAGGTGGCAGAGACAGCAGCAGTGGTGATGGTAGTGAGGCCTGTGGCCACCCTGAGCCCAGGGGAGC
CCCAAGCACCTCTGGAGAGAGTGCGTCAGATCTACAGCGAACACAACTACTGCCGCCTTGTCCTCTGAAT
GGAGAGCACACTCCAGCTGAAGCTGCCATGCCCAGAGCCAGAAGAGAAGACTCAGCTTCTCTCAGAAAGG
AAGAGAGCTGCCTGTTGAAGAGGGTCCCAGGTGTGCTTACAAGTGGGCTGGAAGATGCCTCTCAACCCCC
TATTGCTCCCACTGGAGACCAGCCGTGTCAGGCTTTGCCCCCTCTGTCCTCCCAAACTCCAGTGGCCGAG
ATGTTAACAGAGCAGCCTAAGTTGCTTCTAGATGATAGAACTGAGTGTGAATCTAGTAGAGAAGATCAAG
GACCCACCATTCCCTCAGAGAGTAGTTCTGGACGGTTTCCATTGGGAGATCTATTAGGAGGAGGAAGTGA
CCAGGCCTTTGATAATATGAAGGAGCCTGTAAGTATGACACCTACTTTTATATCTGAATTGTCATTAGCT
AACTACCTACAGGATAGGCCTGATGATGATGGATTAGGGCTTGGTGCCACAGGCCTACTCATAAGGGAAA
GTAGTAGACAAGAAGCTTTGACTGAGGCTTTTGCATCTGGCAGTCCTACCTCCTGGGTACCCATTCTGTC
AAATTATGAGGTAATAAAAACATCTGATCCAGAATCCAGAGAAAACATACCATGTCCGGAGCCCCAGGAT
GAAAAAGAGTGGGAGAGAGCTGTTCCTCTCATTGCAGCAACAGAAAGTGTGCCCCAACCTGAGAGCTGCA
TTTCACATTGGACACCTCCTCCAGCAGCTGTGGGCAGCACTGGCAGTGACAGTGAGCAAGTGGACCTTGA
AAGACTGGAAATGAATGGCATCTCTGAAGCACCAAGTCCTCACAGTGAATCCACAGATACAGCCTCTGAC
TCCGAAGGCCATCTCTCTGAGGACAGCAGTGAGGTTGATGCAAGTGAAGTCACAGTGGTAAAAGGGTCAT
TAGGTGGGGATGAAAAGCAAGACTGGGACCCATCTGCCTCACTGTCCAAGGTGAACAATGACCTAAGTGT
GCTTACAAGGACAGGAGGGGTGGCTGCTTCTCAGAGCTGGGTGTCTAGAGTATGTTCAGTCCCACACAAG
ATCCCAGACTCTCTGTTGCTGTCCAGTACTGAGTGCCAGCCGAGGTCTGTGTGCCCACTGAGGCCTGGCT
CTTCAGTGGAGGTTACCAACCCACTTGTGATGCACCTGCTGCATGGTAATTTGCCCTTGGAGAAGGTTCT
TCCTCCAGGTCACAGAAGCAGCCGACTAGAGTCATCACAGCTGCCACTTAGAGAACAGAGCCAGGATAGA
GGCACTCTACAAGGTACAGGGGAAAACAATCGCCTAGCTGCCAGAATCAACCCTGGTTCTGCACAAACAT
TGAAAGAGTCTATTCTGGCCCAGAGCTATGGAGCAAGTGCTGGTCTTGTCAGGGCAATGGCCTCCAAGGC
TCCTGCAATGTCCCAGAAGATTGCGAAGATGGTTACAAGTTTAGACTCACAGCATCCAGAGACAGAACTG
ACACCTTCCTCTGGCAATCTGGAAGAAATAGATTCCAAAGAGCATCTCTCTTCCTTCCTTTGTGAAGAGC
AGAAAGAAGGCCATTCCCTGTCTCAAGGCAGTGATCCAGGTGCGGCCCCAGGCCAATGTCTAGGAGATCA
CACTACCTCCAAAGTGCCATGTTTCTCCTCCACAAATGTGAGCCTCTCCTTTGGATCTGAGCAGACAGAT
GGGACCCTGAGTGATCAGAACAATGCTGGTGGTCATGAAAAGAAACTATTTGGTCCCGGGAATACAGTTA
CCACCCTTCAGTGCCCCAGGTCTGAAGAGCAGACACCACTACCTGCTGAGGTCCCTCCAGTGTTTCCCAG
TAGGAAGATAGAACCAAGCAAAAACTCTGTGTCTGGTGGTGTGCAAACTACAAGGGAAAACAGGATGCCC
AAACCACCTCCTGTCTCTGCTGACAGCATCAAGACAGAGCAGACATTTTTGAGGGATCCTATTAAGGCAG
ATGCAGAGAACAGAAAAGCTGCAGGGTACAGTTCTCTGGAACTAGTGGGTCACTTGCAAGGGATGCCTTT
TGTTGTGGATCTGCCTTTCTGGAAGTTACCCAGAGAGCCAGGGAAAGGGTTCAGTCAACCCCTGGAGCCT
TCTTCCATCCCTTCCCAACTCAACATCAAGCAGGCCTTGTATGGGAAGTTGTCTAAACTTCAGCTCAGTC
CCACCAGCTTTAATTACTCCTCTAGCTCTGCTACCTTTCCCAAAGGCCTTGCTGGTGGTGTGGTGCAGCT
GAGCCACAAAGCCAGCTTTGGTACAGGCCACACTGCATCACTGTCCTTACAAATGTTCGCTGACAGCAGT
GCAGTAGAAAGCATCTCTCTCCAATGTGCATGCAGCCTGAAAGCCATGATCATGTGCCAAGGCTGCGGAG
CATTCTGCCATGATGACTGCATTGGACCTTCAAAGCTCTGTGTATTGTGCCTTGTGGTGAGATAA

Translation (1514 aa):
MKDKQKRKKERTWAEAARLVLENYSDAPMTPKQILQVIEAEGLKEMRSGTSPLACLNAMLHSNSRGGEGL
FYKLPGRISLFTLKKDAVQWSRNAATVDGDEPEDSADVESCGSNEASTVSGENDVSLDETSSNASCSTES
QSRPLSNPRDSHRASSQANKQKKRTGVMLPRVVLTPLKVNGAHVEPASGFSGRHADGESGSPSSSSSGSL
ALGNSAIRGQAEVTRDPAPLLRGFRKPATGQMKRNRGEEVDFETPGSILVNTNLRALINSRTFHALPLHF
QQQLLLLLPEVDRQVGTDGLLRLSGSALNNEFFTHAAQSWRERLADGEFTHEMQVRLRQEMEKEKKVEQW
KEKFFEDYYGQKLGLTKEESLQQKEVQEEAKVKSGLCVSGESVRPQRGPNTRQRDGHFKKRSRPDLRTRS
RRNIYKKQEPEQAGVAKDASAAPDVSLSKDTKTDLAGVNSTPGPDVSSATSGQEGPKCPSEPVASQIQAE
RDNLACASASPDRIPTLPQDTVDQETKDQKRKSFEQEASASFPEKKPRLEDRQSFRNTIESVHTEKPQPT
KEEPKVPPIRIQLSRIKPPWVAKGRPTYQICPRIVPITESSCRGWTGARTLADIKARALQARGARGYHCN
RETATTAIGGGGGPGGGGSGAIDEGGGRDSSSGDGSEACGHPEPRGAPSTSGESASDLQRTQLLPPCPLN
GEHTPAEAAMPRARREDSASLRKEESCLLKRVPGVLTSGLEDASQPPIAPTGDQPCQALPPLSSQTPVAE
MLTEQPKLLLDDRTECESSREDQGPTIPSESSSGRFPLGDLLGGGSDQAFDNMKEPVSMTPTFISELSLA
NYLQDRPDDDGLGLGATGLLIRESSRQEALTEAFASGSPTSWVPILSNYEVIKTSDPESRENIPCPEPQD
EKEWERAVPLIAATESVPQPESCISHWTPPPAAVGSTGSDSEQVDLERLEMNGISEAPSPHSESTDTASD
SEGHLSEDSSEVDASEVTVVKGSLGGDEKQDWDPSASLSKVNNDLSVLTRTGGVAASQSWVSRVCSVPHK
IPDSLLLSSTECQPRSVCPLRPGSSVEVTNPLVMHLLHGNLPLEKVLPPGHRSSRLESSQLPLREQSQDR
GTLQGTGENNRLAARINPGSAQTLKESILAQSYGASAGLVRAMASKAPAMSQKIAKMVTSLDSQHPETEL
TPSSGNLEEIDSKEHLSSFLCEEQKEGHSLSQGSDPGAAPGQCLGDHTTSKVPCFSSTNVSLSFGSEQTD
GTLSDQNNAGGHEKKLFGPGNTVTTLQCPRSEEQTPLPAEVPPVFPSRKIEPSKNSVSGGVQTTRENRMP
KPPPVSADSIKTEQTFLRDPIKADAENRKAAGYSSLELVGHLQGMPFVVDLPFWKLPREPGKGFSQPLEP
SSIPSQLNIKQALYGKLSKLQLSPTSFNYSSSSATFPKGLAGGVVQLSHKASFGTGHTASLSLQMFADSS
AVESISLQCACSLKAMIMCQGCGAFCHDDCIGPSKLCVLCLVVR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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