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Report for CCDS38282.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38282.2 Public Mus musculus 2 Mylk2 23 108 98 CCDS HistoryNCBI Gene:228785Re-query CCDS DB by CCDS ID:38282.2See the combined annotation on chromosome 2 in Sequence Viewer

Public Note for CCDS 38282.1
The coding region has been updated to represent an alternate exon or splice site that is more supported by the available transcript and protein data.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 38282.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028970.7 ENSMUSP00000028970.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028970.7Link to Ensembl Protein Viewer:ENSMUSP00000028970.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000028970Re-query CCDS DB by Protein ID:ENSMUSP00000028970
Original member Current member NCBI NM_001081044.2 NP_001074513.2 Accepted alive Link to Nucleotide Sequence:NM_001081044.2Link to Protein Sequence:NP_001074513.2Re-query CCDS DB by Nucleotide ID:NM_001081044Re-query CCDS DB by Protein ID:NP_001074513Link to BLAST:NP_001074513.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074513.2 613 Q8VCR8 613 100% 0 0

Chromosomal Locations for CCDS 38282.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 152911548 152911599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152912040 152912514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152913445 152913740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152915130 152915235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152915657 152915750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152917334 152917443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152917525 152917666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152919149 152919219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152919325 152919453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152920286 152920438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152920521 152920653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152922075 152922155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1842 nt):
ATGACTACAGAAAACGGAGCAGTTGAGCTGGGAAGCCAGAGCCTGTCAACAGAACAGACACCTAAAGCCG
CTGCAGGTGATGGACCTTCAGCTTCAGAAAAAGAACCCAGCGCCCCAGCCACAGAGAAAGACCTGAGCCC
CCCTAACGCGAAGAAAGACCCGGGCGCGCCAGATCCAAAGAACAATCCAGATCCACCCTCCCTGAAGAAA
GATCCCGCCAAAGCCCCTGGCCCAGAGAAAAAGGGTGACCCGGTCCCAGCTTCAGCCAGCAGCCAGGGCC
CTTCAGGAGAGGGAGATGGAGGTGGGGGACCTGCTGAAGGCAGTGAGGGGCCTCCTGCAGCCTTGCCCCT
GCCCACTGCTACAGCCGAGGCCAGCATCCAGAAGCTGGACCCCACGCAAGCACCCTCAGGCAACCAGGGA
TCCGGAGAAGCCAAGGCAGGCAAGAAGGCAGCAGAATGCCGCGAAGCAGGAAGAAGGGGCTCACCTGCCT
TTCTCCACAGCCCTAGCTGCCCGGCTATCATCTCCTGCTCTGAGAAGACACTGGCTGTGAAGCCCCTAAG
CGAGACAACAGACCTCGTCTTTACAGGGGTGTCTGTGACCCCTGACCCCCAAGATCCTGGTCCAGTCAAA
GCAGGAGGGACAAACGCCCTGGCAGAGAAGAAGAAGGAAGAGGCAGAGAAAGCCTCAGGCCAGGCCGGGC
AGGCTAAGGTGCAAGGGGACACCCCCCAGAGGATCGGGTTCCAGGCTGTTCCCTCAGAGAGAGTGGAGGT
GGGGCAGGCCCTCTGTCTCACTGCCAGGGAGGAAGACTGCTTCCAAATCCTGGATGATTGTCCACCGCCC
CCAGCCCCCTTCCCACACAGGATCGTGGAGCTGAGGACCGGAAATGTCAACAGTGAATTCAGCATGAACT
CAAAGGAGGCACTGGGAGGTGGCAAATTTGGAGCTGTGTGCACCTGCACGGAGAGAGCCACAGGCCTCAA
GCTGGCAGCCAAGGTCATCAAGAAACAGACACCCAAGGACAAGGAAATGGTGTTGCTGGAGATCGAGGTC
ATGAACCAGCTGAACCATCGCAACCTGATCCAGCTGTACGCAGCCATTGAGACCTCTCACGAGATCATCC
TGTTCATGGAATACATCGAGGGCGGCGAGCTCTTTGAGAGGATTGTGGATGAAGACTACCATCTGACGGA
GGTGGACACCATGGTGTTCGTCAGGCAGATCTGCGACGGGATCCTCTTCATGCACAAGATGAGGGTCCTG
CATCTGGACCTCAAGCCAGAGAACATCCTGTGTGTGAATACCACTGGGCACTTGGTGAAGATAATTGACT
TTGGCTTGGCGAGGAGGTATAACCCCAATGAGAAACTGAAGGTGAATTTTGGGACCCCGGAGTTCCTGTC
ACCGGAGGTGGTGAACTACGACCAAATCTCTGACAAGACAGACATGTGGAGCCTTGGGGTGATCACCTAC
ATGCTACTGAGTGGCCTCTCTCCCTTCCTGGGAGACGATGACACGGAGACCTTAAACAATGTCCTGTCTG
CCAACTGGTACTTTGATGAGGAGACCTTTGAAGCTGTGTCAGATGAGGCCAAAGACTTTGTCTCCAATCT
TCTCACGAAGGACCAGAGTGCCAGAATGAGTGCTGAGCAGTGCCTCGCCCACCCCTGGCTCAACAACCTG
GCAGAAAAAGCCAAACGCTGCAACCGTCGCCTCAAGTCCCAGATCCTGCTTAAGAAATACCTCATGAAGA
GGCGTTGGAAGAAAAACTTCATTGCTGTCAGCGCAGCCAATCGCTTCAAGAAGATCAGTAGCTCGGGGGC
ACTGATGGCTCTGGGGGTCTGA

Translation (613 aa):
MTTENGAVELGSQSLSTEQTPKAAAGDGPSASEKEPSAPATEKDLSPPNAKKDPGAPDPKNNPDPPSLKK
DPAKAPGPEKKGDPVPASASSQGPSGEGDGGGGPAEGSEGPPAALPLPTATAEASIQKLDPTQAPSGNQG
SGEAKAGKKAAECREAGRRGSPAFLHSPSCPAIISCSEKTLAVKPLSETTDLVFTGVSVTPDPQDPGPVK
AGGTNALAEKKKEEAEKASGQAGQAKVQGDTPQRIGFQAVPSERVEVGQALCLTAREEDCFQILDDCPPP
PAPFPHRIVELRTGNVNSEFSMNSKEALGGGKFGAVCTCTERATGLKLAAKVIKKQTPKDKEMVLLEIEV
MNQLNHRNLIQLYAAIETSHEIILFMEYIEGGELFERIVDEDYHLTEVDTMVFVRQICDGILFMHKMRVL
HLDLKPENILCVNTTGHLVKIIDFGLARRYNPNEKLKVNFGTPEFLSPEVVNYDQISDKTDMWSLGVITY
MLLSGLSPFLGDDDTETLNNVLSANWYFDEETFEAVSDEAKDFVSNLLTKDQSARMSAEQCLAHPWLNNL
AEKAKRCNRRLKSQILLKKYLMKRRWKKNFIAVSAANRFKKISSSGALMALGV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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