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Report for CCDS16000.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16000.1 Public Mus musculus 2 Zbtb6 23 108 98 CCDS HistoryNCBI Gene:241322Re-query CCDS DB by CCDS ID:16000.1Re-query CCDS DB by GeneID:241322See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16000.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053098.5 ENSMUSP00000056100.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053098.5Link to Ensembl Protein Viewer:ENSMUSP00000056100.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000053098Re-query CCDS DB by Protein ID:ENSMUSP00000056100
Original member Current member EBI ENSMUST00000112932.1 ENSMUSP00000108554.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112932.1Link to Ensembl Protein Viewer:ENSMUSP00000108554.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112932Re-query CCDS DB by Protein ID:ENSMUSP00000108554
Original member Current member NCBI NM_146253.5 NP_666365.1 Accepted alive Link to Nucleotide Sequence:NM_146253.5Link to Protein Sequence:NP_666365.1Re-query CCDS DB by Nucleotide ID:NM_146253Re-query CCDS DB by Protein ID:NP_666365Link to BLAST:NP_666365.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666365.1 423 Q8K088 423 100% 0 0

Chromosomal Locations for CCDS 16000.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 37428643 37429914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1272 nt):
ATGGCTGCTGAGTCTGATGTTCTACACTTCCAGTTTGAACAGCAAGGAGATGTGGTCCTACAGAAAATGA
ATCTCTTGAGACAGCAGAATTTATTTTGTGATGTATCCATTTATATTAACGATACTGAGTTCCAGGGGCA
CAAGGTGATTTTGGCTGCTTGCTCCACTTTCATGAGAGATCAGTTTTTACTCACACAGTCAAAACATGTC
AGAATCACCATTCTACAGAGTGCAGAAGTAGGCTGGAAGTTGCTGTTGTCCTGCTATACTGGAGCACTTG
AAGTAAAAAGAAAAGAGCTTTTGAAATACTTGACTGCTGCCAGTTACCTTCAGATGGTTCACATTGTAGA
AAAATGCACAGAAGCTTTGTCAAAGTATTTGGAAATTGACCTTTCTATGAAAAATAACCAACACACTGAC
TTGTGTCAGTCTTCAGATACAGATGTTAAGAATGAAGAAGAAAATTCTGATAAAGACTGTGAGATCATTG
AAATTTCAGAAGATAGTCCTGTAAACCTAGATTTCCATGTCAAAGAGGAGGAAAGCAATGCATTACAATC
TGCTGCAGAGACACTGACATCAGAGCGGATGAGAATGCAGTCACCGGAGCTCTCTGCAGTAGATGGTGGC
TTTAAAGAGAATGAAATTTGTATCCTCCATGTAGAATCCATTAGTACAGATGATGTAGAAAATGGGCAGT
TTTCACAGCCTTGTACCTCATCCAAAGCAGGCATATATTTCCCTGAAACACAGCATTCATTGATCAATTC
TACAGTTGAGAACAGAGTGACAGAAGTTCCTGGAAATACAAATCAGGGGTTATTTTCTGAGAATTCTGAT
GGAAGTCATGGTACGGTAAATGAGATCCAGAATCTGGATGAGAATTTTTCCTTGAGGCATCAGTGCCCCA
GGTGTCCAAGGGGATTTCTTCATGTAGAAAACTATCTGCGACACCTTAAGATGCATAAACTCTTTTTGTG
CTTGCAGTGTGGGAAAACATTTACACAGAAGAAAAATCTTAATCGGCATATTCGAGGACACATGGGTATA
AGGCCCTTTCAGTGTACTGTGTGTTTAAAGACCTTTACTGCTAAAAGCACACTTCAGGACCACTTGAACA
TACACAGTGGGGATCGGCCATATAAATGCCATTGTTGTGATATGGATTTCAAACACAAATCTGCTCTCAA
AAAGCACTTAACCTCTGTTCATGGCAGGAGCAGTGGTGAAAAATTATCTAGGCCTGATCTCAAACGGCAG
AATCTACTGTAA

Translation (423 aa):
MAAESDVLHFQFEQQGDVVLQKMNLLRQQNLFCDVSIYINDTEFQGHKVILAACSTFMRDQFLLTQSKHV
RITILQSAEVGWKLLLSCYTGALEVKRKELLKYLTAASYLQMVHIVEKCTEALSKYLEIDLSMKNNQHTD
LCQSSDTDVKNEEENSDKDCEIIEISEDSPVNLDFHVKEEESNALQSAAETLTSERMRMQSPELSAVDGG
FKENEICILHVESISTDDVENGQFSQPCTSSKAGIYFPETQHSLINSTVENRVTEVPGNTNQGLFSENSD
GSHGTVNEIQNLDENFSLRHQCPRCPRGFLHVENYLRHLKMHKLFLCLQCGKTFTQKKNLNRHIRGHMGI
RPFQCTVCLKTFTAKSTLQDHLNIHSGDRPYKCHCCDMDFKHKSALKKHLTSVHGRSSGEKLSRPDLKRQ
NLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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