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Report for CCDS19547.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19547.1 Public Mus musculus 5 Crybb3 23 108 98 CCDS HistoryNCBI Gene:12962Re-query CCDS DB by CCDS ID:19547.1Re-query CCDS DB by GeneID:12962See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19547.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000076069.12 ENSMUSP00000075440.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000076069.12Link to Ensembl Protein Viewer:ENSMUSP00000075440.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000076069Re-query CCDS DB by Protein ID:ENSMUSP00000075440
Original member Current member EBI ENSMUST00000118226.7 ENSMUSP00000112618.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118226.7Link to Ensembl Protein Viewer:ENSMUSP00000112618.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118226Re-query CCDS DB by Protein ID:ENSMUSP00000112618
Original member Current member EBI ENSMUST00000120506.7 ENSMUSP00000112718.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120506.7Link to Ensembl Protein Viewer:ENSMUSP00000112718.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120506Re-query CCDS DB by Protein ID:ENSMUSP00000112718
Original member Current member EBI ENSMUST00000117143.7 ENSMUSP00000113347.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117143.7Link to Ensembl Protein Viewer:ENSMUSP00000113347.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000117143Re-query CCDS DB by Protein ID:ENSMUSP00000113347
Original member Current member EBI ENSMUST00000119627.7 ENSMUSP00000113572.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119627.7Link to Ensembl Protein Viewer:ENSMUSP00000113572.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119627Re-query CCDS DB by Protein ID:ENSMUSP00000113572
Original member Current member NCBI NM_001159650.1 NP_001153122.1 Accepted alive Link to Nucleotide Sequence:NM_001159650.1Link to Protein Sequence:NP_001153122.1Re-query CCDS DB by Nucleotide ID:NM_001159650Re-query CCDS DB by Protein ID:NP_001153122Link to BLAST:NP_001153122.1
Original member Current member NCBI NM_001359004.1 NP_001345933.1 Accepted alive Link to Nucleotide Sequence:NM_001359004.1Link to Protein Sequence:NP_001345933.1Re-query CCDS DB by Nucleotide ID:NM_001359004Re-query CCDS DB by Protein ID:NP_001345933Link to BLAST:NP_001345933.1
Original member Current member NCBI NM_001359005.1 NP_001345934.1 Accepted alive Link to Nucleotide Sequence:NM_001359005.1Link to Protein Sequence:NP_001345934.1Re-query CCDS DB by Nucleotide ID:NM_001359005Re-query CCDS DB by Protein ID:NP_001345934Link to BLAST:NP_001345934.1
Original member Current member NCBI NM_001359006.1 NP_001345935.1 Accepted alive Link to Nucleotide Sequence:NM_001359006.1Link to Protein Sequence:NP_001345935.1Re-query CCDS DB by Nucleotide ID:NM_001359006Re-query CCDS DB by Protein ID:NP_001345935Link to BLAST:NP_001345935.1
Original member Current member NCBI NM_001359007.1 NP_001345936.1 Accepted alive Link to Nucleotide Sequence:NM_001359007.1Link to Protein Sequence:NP_001345936.1Re-query CCDS DB by Nucleotide ID:NM_001359007Re-query CCDS DB by Protein ID:NP_001345936Link to BLAST:NP_001345936.1
Original member Current member NCBI NM_001359008.1 NP_001345937.1 Accepted alive Link to Nucleotide Sequence:NM_001359008.1Link to Protein Sequence:NP_001345937.1Re-query CCDS DB by Nucleotide ID:NM_001359008Re-query CCDS DB by Protein ID:NP_001345937Link to BLAST:NP_001345937.1
Original member Current member NCBI NM_021352.3 NP_067327.1 Accepted alive Link to Nucleotide Sequence:NM_021352.3Link to Protein Sequence:NP_067327.1Re-query CCDS DB by Nucleotide ID:NM_021352Re-query CCDS DB by Protein ID:NP_067327Link to BLAST:NP_067327.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153122.1 211 Q9JJU9 211 100% 0 0
NP_001345933.1 211 Q9JJU9 211 100% 0 0
NP_001345934.1 211 Q9JJU9 211 100% 0 0
NP_001345935.1 211 Q9JJU9 211 100% 0 0
NP_001345936.1 211 Q9JJU9 211 100% 0 0
NP_001345937.1 211 Q9JJU9 211 100% 0 0
NP_067327.1 211 Q9JJU9 211 100% 0 0

Chromosomal Locations for CCDS 19547.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 113075906 113076071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113077535 113077677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113078383 113078515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113079760 113079878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113080480 113080554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (636 nt):
ATGGCGGAGCAGCACGGAGCACCTGAGCAGGCTGCAGCTGGCAAGAGCCATGGAGGCCTTGGGGGCAGCT
ACAAGGTGACGGTGTACGAGTTAGAGAACTTCCAGGGCAAGCGATGCGAGCTCTCGGCGGAGTGTCCCAA
CCTCACCGACAGCCTGTTGGAGAAGGTGGGCTCCATCCAAGTGGAGTCTGGACCGTGGCTGGCGTTCGAG
CGCAGGGCCTTTCGTGGGGAGCAGTTTGTTCTGGAGAAGGGGGACTACCCTCGCTGGGATGCCTGGTCCA
GCAGCCGACGTAGTGACATTCTCCTGTCCCTCCGTCCTTTGCACATTGATGGCCCAGACCACAAGCTGCA
CCTGTTTGAGAACCCAGCCTTCAGTGGGCGCAAGATGGAGATCGTAGATGACGATGTGCCCAGCCTGTGG
GCCCATGGTTTCCAGGACCGTGTGGCCAGCATCCGTGTCATCAACGGGACGTGGGTGGGCTACGAGTTCC
CGGGCTACCGTGGGCGCCAGTACGTGTTCGAGCGGGGCGAATTCCGCCACTGGAACGAGTGGGACGCCAA
CCAGCCGCAGCTGCAGTCGGTGCGCCGCATCCGCGACCAGAAGTGGCACAAGCGCGGCTGCTTCCTGAGC
AGCTGA

Translation (211 aa):
MAEQHGAPEQAAAGKSHGGLGGSYKVTVYELENFQGKRCELSAECPNLTDSLLEKVGSIQVESGPWLAFE
RRAFRGEQFVLEKGDYPRWDAWSSSRRSDILLSLRPLHIDGPDHKLHLFENPAFSGRKMEIVDDDVPSLW
AHGFQDRVASIRVINGTWVGYEFPGYRGRQYVFERGEFRHWNEWDANQPQLQSVRRIRDQKWHKRGCFLS
S


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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