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Report for CCDS18416.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18416.1 Public Mus musculus 4 Prkaa2 23 108 98 CCDS HistoryNCBI Gene:108079Re-query CCDS DB by CCDS ID:18416.1Re-query CCDS DB by GeneID:108079See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18416.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030243.7 ENSMUSP00000030243.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030243.7Link to Ensembl Protein Viewer:ENSMUSP00000030243.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000030243Re-query CCDS DB by Protein ID:ENSMUSP00000030243
Original member Current member NCBI NM_178143.2 NP_835279.2 Accepted alive Link to Nucleotide Sequence:NM_178143.2Link to Protein Sequence:NP_835279.2Re-query CCDS DB by Nucleotide ID:NM_178143Re-query CCDS DB by Protein ID:NP_835279Link to BLAST:NP_835279.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_835279.2 552 Q8BRK8 552 100% 0 0

Chromosomal Locations for CCDS 18416.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 105036092 105036330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 105036699 105036825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 105039722 105040226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 105047091 105047315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 105049334 105049421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 105051202 105051346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 105051916 105052009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 105075414 105075555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 105109705 105109798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1659 nt):
ATGGCTGAGAAGCAGAAGCACGACGGGCGGGTGAAGATCGGACACTACGTCCTGGGGGACACCCTGGGCG
TCGGCACCTTCGGCAAAGTGAAGATTGGAGAACACCAATTGACAGGCCATAAAGTGGCAGTTAAGATCTT
AAATAGACAGAAGATTCGCAGTTTAGATGTTGTTGGAAAAATAAAACGAGAAATTCAAAATCTTAAACTC
TTTCGTCATCCTCATATTATCAAACTCTACCAGGTGATCAGCACTCCGACAGACTTTTTTATGGTAATGG
AATATGTGTCTGGAGGTGAATTGTTCGACTACATCTGCAAACATGGGCGGGTTGAAGAGGTGGAAGCGCG
CCGGCTCTTCCAGCAGATCCTGTCTGCCGTGGATTACTGTCACAGGCATATGGTTGTCCATAGGGACCTG
AAGCCAGAGAATGTGCTGCTGGATGCCCAGATGAACGCTAAGATAGCTGACTTTGGACTATCTAATATGA
TGTCAGATGGTGAATTTCTACGAACTAGCTGTGGATCGCCAAATTATGCAGCACCTGAGGTCATCTCAGG
AAGGCTGTATGCAGGTCCCGAGGTCGATATCTGGAGCTGTGGTGTCATCCTGTATGCCCTTCTCTGTGGC
ACCCTCCCTTTCGATGATGAGCACGTGCCTACGCTCTTCAAGAAGATCCGAGGGGGTGTGTTTTACATCC
CAGACTATCTCAACCGTTCTGTCGCCACTCTGCTGATGCACATGCTCCAGGTGGACCCCCTGAAGCGAGC
GACTATCAAAGACATACGAGAACATGAATGGTTTAAACAGGATTTGCCCAGCTACCTATTTCCTGAAGAC
CCCTCCTACGATGCGAATGTCATTGACGATGAGGCTGTGAAGGAAGTCTGTGAGAAATTCGAGTGTACAG
AGTCAGAAGTGATGAATAGTCTGTATAGTGGTGACCCTCAAGACCAGCTTGCAGTGGCTTATCATCTTAT
CATTGACAATCGGAGAATAATGAACCAAGCCAGTGAGTTCTACCTCGCCTCTAGTCCTCCATCAGGTTCT
TTTATGGATGACAGCGCCATGCATATTCCTCCAGGCTTGAAACCACATCCAGAAAGGATGCCGCCTCTCA
TCGCAGACAGCCCCAAAGCACGCTGTCCACTGGATGCACTCAACACAACGAAGCCCAAGTCTCTAGCTGT
GAAAAAAGCCAAGTGGCATCTTGGAATCCGAAGCCAGAGCAAAGCGTGTGACATTATGGCTGAAGTGTAC
CGAGCTATGAAGCAGCTGGGTTTTGAATGGAAGGTAGTGAATGCATACCATCTTCGAGTAAGAAGAAAAA
ACCCAGTGACTGGCAACTATGTGAAAATGAGCTTACAGCTTTACCTGGTAGACAGTCGGAGCTATCTTCT
GGACTTCAAAAGCATCGATGATGAGGTGGTGGAGCAGAGGTCTGGTTCTTCAACACCCCAGCGCTCCTGT
TCTGCTGCGGGCCTCCACAGAGCACGGTCAAGTTTTGATTCCAGCACAGCTGAGAACCACTCCCTTTCTG
GCTCTCTCACTGGCTCTTTGACTGGCAGCACTTTGTCCTCGGCATCCCCGCGCCTGGGCAGTCACACCAT
GGATTTTTTTGAAATGTGCGCCAGTCTTATCACTGCTTTAGCTCGTTGA

Translation (552 aa):
MAEKQKHDGRVKIGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKL
FRHPHIIKLYQVISTPTDFFMVMEYVSGGELFDYICKHGRVEEVEARRLFQQILSAVDYCHRHMVVHRDL
KPENVLLDAQMNAKIADFGLSNMMSDGEFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCG
TLPFDDEHVPTLFKKIRGGVFYIPDYLNRSVATLLMHMLQVDPLKRATIKDIREHEWFKQDLPSYLFPED
PSYDANVIDDEAVKEVCEKFECTESEVMNSLYSGDPQDQLAVAYHLIIDNRRIMNQASEFYLASSPPSGS
FMDDSAMHIPPGLKPHPERMPPLIADSPKARCPLDALNTTKPKSLAVKKAKWHLGIRSQSKACDIMAEVY
RAMKQLGFEWKVVNAYHLRVRRKNPVTGNYVKMSLQLYLVDSRSYLLDFKSIDDEVVEQRSGSSTPQRSC
SAAGLHRARSSFDSSTAENHSLSGSLTGSLTGSTLSSASPRLGSHTMDFFEMCASLITALAR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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