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Report for CCDS17967.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17967.1 Public Mus musculus 4 Ints8 23 108 98 CCDS HistoryNCBI Gene:72656Re-query CCDS DB by CCDS ID:17967.1Re-query CCDS DB by GeneID:72656See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17967.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000044616.9 ENSMUSP00000038418.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000044616.9Link to Ensembl Protein Viewer:ENSMUSP00000038418.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000044616Re-query CCDS DB by Protein ID:ENSMUSP00000038418
Original member Current member EBI ENSMUST00000108319.8 ENSMUSP00000103955.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108319.8Link to Ensembl Protein Viewer:ENSMUSP00000103955.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000108319Re-query CCDS DB by Protein ID:ENSMUSP00000103955
Original member Current member NCBI NM_001159595.1 NP_001153067.1 Accepted alive Link to Nucleotide Sequence:NM_001159595.1Link to Protein Sequence:NP_001153067.1Re-query CCDS DB by Nucleotide ID:NM_001159595Re-query CCDS DB by Protein ID:NP_001153067Link to BLAST:NP_001153067.1
Original member Current member NCBI NM_178112.5 NP_835213.3 Accepted alive Link to Nucleotide Sequence:NM_178112.5Link to Protein Sequence:NP_835213.3Re-query CCDS DB by Nucleotide ID:NM_178112Re-query CCDS DB by Protein ID:NP_835213Link to BLAST:NP_835213.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153067.1 995 Q80V86 995 100% 0 0
NP_835213.3 995 Q80V86 995 100% 0 0

Chromosomal Locations for CCDS 17967.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 11204467 11204583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11208826 11208869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11209212 11209276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11209392 11209465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11211882 11211932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11213706 11213809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11216457 11216575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11218612 11218673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11218769 11218825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11219893 11219926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11221113 11221297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11223766 11223887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11225602 11225803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11227120 11227230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11228851 11228984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11230333 11230508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11231653 11231723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11234571 11234712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11235510 11235610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11239307 11239462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11241581 11241688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11245724 11245906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11246095 11246146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11247832 11247903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11248171 11248311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11252776 11252950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11253981 11254110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2988 nt):
ATGAGCGCGGAGGCGGCGGACCGGGAGGCGGCCACCTCCAGCCGGCCCTGCACCCCGCCGCAGACTTGCT
GGTTCGAGTTCCTGCTGGAGGAGTCGCTGTTGGAGAAGCATCTGCGCAAAGCCTGTCCGGATCCTGCACC
AGTTCAGCTTATAGTTCAGTTTTTGGAGCAGGCTTCCAAACCTTCAGTTAATGAGCAAAACCAAGTCCAG
CCTCCACCTGATAACAAGAGAAATCGCGTCCTAAAGCTTCTTGCTCTTAAAGTTGCTGCACATTTGAAGT
GGGATTTAGACATACTGGAGAAAAGCCTGTCTGTTCCGGTGCTGAACATGCTGCTGAATGAGCTCCTGTG
CATCAGTAAGGTCCCTCCCGGGACCAAGCACGTGGACATGGATCTGTCAGCCCTGCCCCCAACCACTGCC
ATGGCCATCCTGCTCTACAACCGATGGGCAATTAGGACAATTGTTCAAAGTAGTTTTCCTGTCAAACAGG
CTAAACCTGGACCCCCTCAACTAAATGTCATGAATCAGATGCAACAGGAAAAAGAACTGACAGAAAACAT
TTTGAAAGTGCTAAAAGAACAAGCTGCTGATTGTATTTTGGTCCTGGAAGCAGCTCTGAGATTAAACAAG
GATCTGTATGTTCACACGATGAGAACTCTAGACTTGCTGGCCGTGGAGCCAGGCACGGTGAATGGGGAGA
CTGAGAACTCTACGGCTGGGTTGAAAATCAGAACTGAGGAGATGCAGTGCCAGGTGTGTTATGACTTGGG
TGCAGCATACTTCCAGCAAGGCTCCACAGATTCAGCCATCTATGAAAACGCAAGAGAGAAGTTTTTTAGA
ACTAAAGAACTACTTGCAGAGATAGGTTCATTATCTCTTCATTGTACCATAGATGAGAAGCGGTTAGCTG
GCTATTGTCAAGCGTGTGATGTTCTTGTACCTTCTTCTGATAATAACTCTCAACAATTGACTCCATACAG
TCAAGTCCATATTTGTTTACGATCTGGCAGCTATCAGGAAGTAGTGCAGATTTTCATTGAAGATAACTTA
ACTTTCACTTTACCAGTCCAGTTCCGACAATCGGTATTAAGGGAACTTTTTCAGAAAGCTCAACAGGGAA
ATGAAGCTCTAGATGAAATCTGTTTTAAAATTTGTGTCTGCAACACAGTACGAGATGTACTGGAAGGCAG
AACAATTAGTGTCCAGTTCAATCAACTATTTCTTAGACCAAACAAAGAAAAAATAGATTTTCTCCTTGAG
GTATGTTCAAGATCAATAAACGTAGAAAAAGCTTCAGATTCTCTGAAAGGAAACATGGCTGCTTTTCTAA
AGAATGTGTGTCTGGGGTTGGAAGATCTGCAGTATGTCTTCATGATTTCGTCTCATGAGCTTTTCATTAC
ACTGTTGAAAGATGAAGAACGAAAGCTGCTTGTTGATCAAATGAGAAAGAGATCCCCGAGAGTAAATCTG
TGCATTAAACCTGTGACTTCATTTTATGATATCCCAGCCTCAGCAAGTGTCAACATTGGCCAGTTGGAAC
ATCAGCTTATATTATCAGTGGATCCCTGGCGGATTAGACAGATTTTAATTGAATTGCATGGTATGACTTC
AGAGCGACAATTTTGGACTGTGTCAAATAAGTGGGAAGTACCTTCTGTATATAGTAGTGTTATCCTAGGA
ATTAAGGACAATTTAACAAGAGATTTGGTTTACATTCTCATGGCCAAAGGTTTACACTGCAGTACTGTTA
AGGACTTTCCTCACTCCAAACAGCTCTTTACAGCTTGTTTGGAGCTGGTGACAGAGTTCTCACCAAAACT
CCGCCAGGTTATGCTGAATGAGATGCTGCTTTTAGATATTCGCACTCACGAGGCTGGAGTGGGGCAGTCA
GGAGAGAGACCTCCTTCTGACCTTATCAGTAGGGTACGAGGATATTTGGAAATGAGGCTTCCTGATATTC
CCCTTCGTCAAGTTGTAGCTGAAGAGTGTGTTGCTTTTATGCTAAACTGGAGAGAAAATGAATATCTTAC
TCTGCAAGTTCCTGCATTTTTATTTCAGAATAACCCATATGTAAAGCTTGGACAGCTTTTAGCAGCCACC
TGCAAAGAACTTCCAGGCCCTAAAGAGAGTAGACGGACCGCTAAAGACCTCTGGGAAGTTGTTGTTCAGA
TCTGCAGTGTGTCTAACCAGCACAAACGAGGAAATGATGGCAGAGTTAGTTTGATAAAGCAGAGGGAATC
CACATTAGGCATAATGTATCGGAGTGAACTACTTTCTTTTATCAAAAAACTCCGGGAACCACTGGTTTTG
ACTATTATTTTATCACTCTTTGTGAAGCTTCACAATGTTCGGGAGGACATTGTGAATGATATCACAGCCG
AGCACATTTCTATCTGGCCATCTTCCATACCTAACCTCCAATCCGTGGATTTTGAAGCTGTAGCAATCAC
TGTGAAAGAGCTAGTTCGATATACACTCAGTATAAATCCAAACAACCATGCTTGGCTAATTATTCAAGCG
GATATTTATTTTGCAACAAATCAGCATTCGGCAGCTCTTCACTATTACCTCCAGGCAGGAGCTGTGTGCT
CTGACTTCTTTAATAAGGCTGTGCCTCCTGATGTATATACAGACCAAGTGATAAAACGAATGATAAAATG
CTGTTCTTTGCTGAATTGTCATACACAGGTGGCAATTTTATGTCAGTTCCTCAGAGAAATTGACTACAAA
ACAGCCTTCAAGTCATTGCAGGAACAAAACAGCCATGACGCTATGGATTCCTACTATGACTACATTTGGG
ACGTCACAATCTTGGAGTACTTGACTTATCTTCATCATAAAAGAGGAGAAACAGATAAAAGACAGATTGC
AATCAAAGCCATTGGCCAAACAGAATTGAATGCAAGCAACCCTGAAGAAGTATTACAGCTGGCAGCACAG
AGAAGGAAAAAGAAGTTTCTACAAGCAATGGCAAAACTTTACTTTTAA

Translation (995 aa):
MSAEAADREAATSSRPCTPPQTCWFEFLLEESLLEKHLRKACPDPAPVQLIVQFLEQASKPSVNEQNQVQ
PPPDNKRNRVLKLLALKVAAHLKWDLDILEKSLSVPVLNMLLNELLCISKVPPGTKHVDMDLSALPPTTA
MAILLYNRWAIRTIVQSSFPVKQAKPGPPQLNVMNQMQQEKELTENILKVLKEQAADCILVLEAALRLNK
DLYVHTMRTLDLLAVEPGTVNGETENSTAGLKIRTEEMQCQVCYDLGAAYFQQGSTDSAIYENAREKFFR
TKELLAEIGSLSLHCTIDEKRLAGYCQACDVLVPSSDNNSQQLTPYSQVHICLRSGSYQEVVQIFIEDNL
TFTLPVQFRQSVLRELFQKAQQGNEALDEICFKICVCNTVRDVLEGRTISVQFNQLFLRPNKEKIDFLLE
VCSRSINVEKASDSLKGNMAAFLKNVCLGLEDLQYVFMISSHELFITLLKDEERKLLVDQMRKRSPRVNL
CIKPVTSFYDIPASASVNIGQLEHQLILSVDPWRIRQILIELHGMTSERQFWTVSNKWEVPSVYSSVILG
IKDNLTRDLVYILMAKGLHCSTVKDFPHSKQLFTACLELVTEFSPKLRQVMLNEMLLLDIRTHEAGVGQS
GERPPSDLISRVRGYLEMRLPDIPLRQVVAEECVAFMLNWRENEYLTLQVPAFLFQNNPYVKLGQLLAAT
CKELPGPKESRRTAKDLWEVVVQICSVSNQHKRGNDGRVSLIKQRESTLGIMYRSELLSFIKKLREPLVL
TIILSLFVKLHNVREDIVNDITAEHISIWPSSIPNLQSVDFEAVAITVKELVRYTLSINPNNHAWLIIQA
DIYFATNQHSAALHYYLQAGAVCSDFFNKAVPPDVYTDQVIKRMIKCCSLLNCHTQVAILCQFLREIDYK
TAFKSLQEQNSHDAMDSYYDYIWDVTILEYLTYLHHKRGETDKRQIAIKAIGQTELNASNPEEVLQLAAQ
RRKKKFLQAMAKLYF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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