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Report for CCDS15105.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15105.1 Public Mus musculus 1 Dner 23 108 98 CCDS HistoryNCBI Gene:227325Re-query CCDS DB by CCDS ID:15105.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 15105.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049126.12 ENSMUSP00000042927.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049126.12Link to Ensembl Protein Viewer:ENSMUSP00000042927.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000049126Re-query CCDS DB by Protein ID:ENSMUSP00000042927
Original member Current member NCBI NM_152915.1 NP_690879.1 Accepted alive Link to Nucleotide Sequence:NM_152915.1Link to Protein Sequence:NP_690879.1Re-query CCDS DB by Nucleotide ID:NM_152915Re-query CCDS DB by Protein ID:NP_690879Link to BLAST:NP_690879.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_690879.1 737 Q8JZM4 737 100% 0 0

Chromosomal Locations for CCDS 15105.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 84370764 84370875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 84383785 84384031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 84395615 84395746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 84405939 84406052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 84418649 84418771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 84445395 84445619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 84476345 84476458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 84494731 84494884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 84534852 84534997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 84580656 84580822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 84583004 84583098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 84585313 84585621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 84695453 84695728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2214 nt):
ATGCCTCCCCGCCGCGCCCAGGCGCCCGGTGCCCCGCTGCTGCCCGTGCTGGCCCTGCTGCCCCTGCTGC
TGGGTGCTGGGCCCCAAAGCGGCTGCTTGGCTAGCCCGGTGTCCGCCGCGCCCCTGCCTGCTCCGGGACC
GTGCGCCTCCCAGCCCTGTCGGAACGGGGGCGTGTGCACTCCGCGTTCGGTGACCGACCAAGAGCACCCT
GCGGCCGATGCTGAGCCCCGCTACAGCTGCACCTGTCCCGCTGGGGTCTCTGGCACCTATTGTCAGTTTG
TTGCAGATCCTTGTGCCAGCAACCCTTGTCACCATGGTAACTGCAGCAGCAGCAGCAGCAGCAGCAGCGA
CAGCTACCTCTGCATTTGCAACGACGGCTATGAAGGTCTTAACTGTGAACAACCACTTCCCAGTATTCCA
ACCTCTGGCTGGACAGAGTCCACGGCACCCAGACAGCTTCAGCCTGTCCCCGCCACCCAGGAGCCTGACA
TAATCCTGCCCCGCTCTCAGGCAACCGTGACACTGCCAACTTGGCAGCCAAAAACAGGGCAGAAAGTTGT
AGAAATGAAATGGGATCAAGTAGAGGTGGTCCCTGATGTTGCCTGTGGGAATGCCAGTTCCAACAACTCT
GCGGGTGGCCGCCTAGTGTCTTTTGAAGTGCCACAGAACACCTCTGTAAAGATTCGGCAGGATGCCAATT
CTTTGCTGATCTTGCTGTGGAAGGTCACAGCCACAGGCTTTCAACAGTGTTCCCTCATAGATGGTCGAAG
TGTGACACCCCTCCAGGCTCCAGGGGGCCTTGTCCTGCTAGAGGAGATGCTGGCCTTGGGACCCAACCAC
TTCATTGGTTTTGTGAATGACTCTGTTGCTAAATCCATTGTGGCTTTGCGTTTAACACTTGTGGTGAAGG
CTAGCAACTGTGTTCCGGGGGACAGCCACTCAAATGACTTAGAGTGTTCGGGAAAAGGAAAATGTGCCAC
GAAGCCATCAGAGGCAACCTTTTCCTGCACCTGCCAGGACCAGTACATTGGCACCTTCTGTGAAGAATTT
GATGCCTGCCAGAGGAAACCCTGCCAGAATGAGGCGAGCTGTATTGATGCAAATGAGAAGCAGGATGGGA
GCAATTTCACTTGCCTTTGTCTTCCAGGTTATACTGGAGAGCTTTGCCAGTCCAAGATTGATTACTGTGT
CCTAGACCCATGCAGAAATGGAGCCACATGTGTGTCCAGCCTCAGCGGGTTCACCTGCCAGTGTCTGGAA
GGGTACTTCGGCTCCGCTTGTGAAGAGAAGGTGGACCCTTGCATGTCCTCTCCATGCCAGAACAATGGCA
CTTGCTACGTGGATGGCGTGCATTTCACCTGCAGCTGCAGCCCAGGCTTCACAGGGCCTACGTGTGCCCA
GCTGGTGGACTTCTGCGCCCTCAGTCCGTGTGCTCATGGCATGTGCCGTAGCGTGGGCACCAGCTACAAG
TGCCTCTGCGATCCAGGTTACCATGGCCTCTACTGTGAGGAGGAATACAATGAGTGCCTGTCGGCCCCTT
GCCTGAATGCCGCCACCTGCCGGGACCTCATCAATGGCTATGAGTGTGTGTGCCTGGCAGAATATAAAGG
AACACACTGCGAACTGTACAAGGACCCCTGTGCTAACATCAGCTGTCTGAATGGAGGTACCTGTGACAGC
GAGGGGCTGAATGGCACGTGCATCTGTGCACCCGGGTTCACAGGTGAAGAGTGTGACATTGACATCAATG
AATGTGATAGTAACCCATGTCATCATGCTGGAACCTGCTTGGACCAGCCCAATGGTTACACCTGCCACTG
TCCTCATGGCTGGGTGGGAGCAAACTGTGAAATCCACCTGCAGTGGAAGTCTGGGCACATGGCCGAGAGC
CTCACCAACATGCCTCGGCACTCCCTCTACATCATCATCGGAGCCCTCTGCGTCGCCTTCATCCTCATGC
TCATCATCCTGATTGTGGGCATCTGCCGCATCAGCCGCATCGAGTACCAGGGCTCCTCCCGGCCAGCCTA
TGAGGAGTTCTACAACTGCCGCAGCATTGACAGTGAGTTCAGCAATGCCATCGCATCCATCCGGCATGCC
AGGTTTGGGAAGAAGTCTCGGCCTGCCATGTACGACGTGACTCCCATTGCCTACGAGGATTACAGTCCCG
ATGACAAACCCTTGGTCACACTGATTAAAACAAAAGATTTGTAA

Translation (737 aa):
MPPRRAQAPGAPLLPVLALLPLLLGAGPQSGCLASPVSAAPLPAPGPCASQPCRNGGVCTPRSVTDQEHP
AADAEPRYSCTCPAGVSGTYCQFVADPCASNPCHHGNCSSSSSSSSDSYLCICNDGYEGLNCEQPLPSIP
TSGWTESTAPRQLQPVPATQEPDIILPRSQATVTLPTWQPKTGQKVVEMKWDQVEVVPDVACGNASSNNS
AGGRLVSFEVPQNTSVKIRQDANSLLILLWKVTATGFQQCSLIDGRSVTPLQAPGGLVLLEEMLALGPNH
FIGFVNDSVAKSIVALRLTLVVKASNCVPGDSHSNDLECSGKGKCATKPSEATFSCTCQDQYIGTFCEEF
DACQRKPCQNEASCIDANEKQDGSNFTCLCLPGYTGELCQSKIDYCVLDPCRNGATCVSSLSGFTCQCLE
GYFGSACEEKVDPCMSSPCQNNGTCYVDGVHFTCSCSPGFTGPTCAQLVDFCALSPCAHGMCRSVGTSYK
CLCDPGYHGLYCEEEYNECLSAPCLNAATCRDLINGYECVCLAEYKGTHCELYKDPCANISCLNGGTCDS
EGLNGTCICAPGFTGEECDIDINECDSNPCHHAGTCLDQPNGYTCHCPHGWVGANCEIHLQWKSGHMAES
LTNMPRHSLYIIIGALCVAFILMLIILIVGICRISRIEYQGSSRPAYEEFYNCRSIDSEFSNAIASIRHA
RFGKKSRPAMYDVTPIAYEDYSPDDKPLVTLIKTKDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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