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Report for CCDS28007.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28007.2 Public Mus musculus 16 P2rx6 23 108 98 CCDS HistoryNCBI Gene:18440Re-query CCDS DB by CCDS ID:28007.2Re-query CCDS DB by GeneID:18440See the combined annotation on chromosome 16 in Sequence Viewer

Public Note for CCDS 28007.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and protein data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 28007.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023441.10 ENSMUSP00000023441.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023441.10Link to Ensembl Protein Viewer:ENSMUSP00000023441.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000023441Re-query CCDS DB by Protein ID:ENSMUSP00000023441
Original member Current member NCBI NM_011028.2 NP_035158.2 Accepted alive Link to Nucleotide Sequence:NM_011028.2Link to Protein Sequence:NP_035158.2Re-query CCDS DB by Nucleotide ID:NM_011028Re-query CCDS DB by Protein ID:NP_035158Link to BLAST:NP_035158.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035158.2 389 O54803 389 100% 0 0

Chromosomal Locations for CCDS 28007.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 17562014 17562183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17562721 17562871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17564956 17565027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17567438 17567513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17567706 17567799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17567873 17567953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17568033 17568174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17568261 17568370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17570358 17570451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17570533 17570598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17570739 17570816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17570930 17570965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1170 nt):
ATGCAGTTGCAGCCAGCAGGAACTGGGAACATGGCTTCTGCAGCCGCAGCAGCACTCGTGAGCTGGGGGT
TTCTGGATTACAAGACGGAGAAATATGTGCTAACCAGGAACTGTCGGGTGGGCGTCTCCCAGAGGCTGCT
GCAGCTGGCAGTGGTAGTCTACGTGATAGGGTGGGCCCTCTTGGCCAAAAAAGGCTACCAGGAACGGGAC
TTGGCCCCTCAGACTTCTGTCATCACCAAACTCAAGGGGGTTTCTGTAACCCAGGTTAAGGAGCTGGAGA
ACCGGCTGTGGGACGTGGCTGACTTTGTGAAGCCATCACAGGGAGAGAACGTGTTCTTCCTGGTAACCAA
CTTCCTCGTGACACCAGCTCAAGTCCAGGGCAGATGTCCAGAGCATCCTTCCGTTCCTCTGGCTAACTGC
TGGGCTGATGAAGACTGCCCCGAAGGGGAGACGGGGACATACAGCCATGGCATAAAAACTGGTCAGTGTG
TGGTGTTCAACGGAACCCACAGGACCTGTGAGATCTGGAGCTGGTGCCCAGTGGAGAGTGGTGCTGTGCC
CAGGAAGCCCCTGCTAGCTCAGGCCAAGAACTTCACACTCTTCATCAAAAATACTGTAACCTTCAGCAAG
TTCAACTTCTCCAGATCCAATGCCTTATTAACCTGGGACAACACATATTTCAAGCATTGTCTCTATGATC
CACTCTCCAGTCCGTACTGCCCAGTGTTCCGCATCGGGGACCTTGTGGCCATGGCTGGAGGGGACTTTGA
GGACCTGGCCTTGCTGGGTGGTGCTGTGGGCATCAGCATTCACTGGGATTGCAACCTGGACACGAAAGGC
TCTGACTGCTGTCCCCAGTACTCCTTCCAGCTGCAGCAGAAAGGGTACAACTTCAGGACAGCCAATCACT
GGTGGGCAGCCTCAGGCGTGGAGACCCGGAGCCTGCTCAAGCTCTATGGAATCCGTTTTGACATTCTTGT
CACTGGGCAGGCAGGGAAGTTCGCGCTCATCCCTACGGCCATCACAGTGGGCACAGGAGCGGCTTGGCTG
GGCATGGTCACCTTCCTCTGTGACCTGCTGCTACTGTATGTGGATAGAGAGGCCGGTTTCTACTGGAGAA
CCAAATATGAAGAGGCAAGAGCCCCAAAGACGACTACCAACAGTTCATAG

Translation (389 aa):
MQLQPAGTGNMASAAAAALVSWGFLDYKTEKYVLTRNCRVGVSQRLLQLAVVVYVIGWALLAKKGYQERD
LAPQTSVITKLKGVSVTQVKELENRLWDVADFVKPSQGENVFFLVTNFLVTPAQVQGRCPEHPSVPLANC
WADEDCPEGETGTYSHGIKTGQCVVFNGTHRTCEIWSWCPVESGAVPRKPLLAQAKNFTLFIKNTVTFSK
FNFSRSNALLTWDNTYFKHCLYDPLSSPYCPVFRIGDLVAMAGGDFEDLALLGGAVGISIHWDCNLDTKG
SDCCPQYSFQLQQKGYNFRTANHWWAASGVETRSLLKLYGIRFDILVTGQAGKFALIPTAITVGTGAAWL
GMVTFLCDLLLLYVDREAGFYWRTKYEEARAPKTTTNSS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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