NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS28521.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28521.1 Public Mus musculus 17 Sox8 23 108 98 CCDS HistoryNCBI Gene:20681Re-query CCDS DB by CCDS ID:28521.1Re-query CCDS DB by GeneID:20681See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28521.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025003.9 ENSMUSP00000025003.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025003.9Link to Ensembl Protein Viewer:ENSMUSP00000025003.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000025003Re-query CCDS DB by Protein ID:ENSMUSP00000025003
Original member Current member NCBI NM_011447.3 NP_035577.1 Accepted alive Link to Nucleotide Sequence:NM_011447.3Link to Protein Sequence:NP_035577.1Re-query CCDS DB by Nucleotide ID:NM_011447Re-query CCDS DB by Protein ID:NP_035577Link to BLAST:NP_035577.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035577.1 464 Q04886 464 100% 0 0

Chromosomal Locations for CCDS 28521.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 25567333 25568081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25568828 25569060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25570110 25570522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1395 nt):
ATGCTGGACATGAGTGAGGCCCGCGCCCAGCCTCCCTGCAGCCCGTCTGGCACCGCTAGCTCCATGTCAC
ACGTGGAGGATTCGGACTCCGACGCGCCACCGTCGCCCGCGGGATCAGAGGGCCTGGGCCGCGCGGGGGG
CGGCGGCCGAGGGGATACTGCTGAGGCAGCAGACGAACGCTTCCCAGCCTGCATCCGTGATGCCGTGTCG
CAGGTGCTTAAGGGTTATGACTGGAGTCTGGTGCCTATGCCTGTGCGCGGCGGCGGTGGCGGCACGCTCA
AGGCCAAGCCACACGTGAAGCGGCCCATGAATGCCTTCATGGTGTGGGCACAGGCGGCGCGCCGCAAGCT
GGCGGACCAGTACCCGCATCTCCATAACGCAGAGCTCAGCAAGACCCTAGGCAAGCTGTGGCGCTTGCTG
AGTGAAAGCGAGAAGAGGCCGTTTGTGGAGGAGGCCGAGAGGCTCCGTGTGCAGCACAAGAAAGACCACC
CAGATTACAAATACCAGCCAAGGCGAAGGAAGAGTGTGAAGACTGGCCGGAGCGACTCAGACTCTGGTAC
TGAACTGGGCCACCACCCTGGTGGTCCCATGTACAAAGCTGATGCAGTGCTCGGCGAGGCACACCATCAC
AGTGACCACCACACAGGCCAGACCCATGGGCCACCCACCCCACCCACTACCCCCAAGACGGACCTGCACC
AGGCGAGCAATGGAAGCAAGCAAGAGCTAAGGCTGGAAGGGCGCCGCCTAGTGGACAGCGGGCGCCAGAA
CATCGACTTCAGCAATGTGGACATCTCCGAGCTCAGCAGCGAGGTTATCAGTAACATGGATACCTTCGAT
GTCCATGAATTTGACCAGTACTTGCCCCTCAATGGCCACTCAGCCCTGCCCACAGAGCCCAGCCAGGCCA
CTGCCTCTGGCTCCTATGGAGGCGCTTCCTACTCGCACTCCGGGGCAACCGGCATAGGGGCATCCCCTGT
GTGGGCCCACAAGGGAGCTCCCTCGGCTTCAGCTTCGCCCACAGAGGCAGGACCCCTTCGGCCACAGATC
AAGACGGAGCAGCTGAGTCCTAGCCACTACAACGACCAGTCACATGGCTCACCTGGCCGTGCTGACTATG
GCTCTTACAGTGCCCAGGCCAGCGTCACCACAGCTGCCTCTGCCACGGCTGCCAGCTCCTTCGCCAGCGC
ACAGTGTGATTACACTGACCTGCAGGCTTCCAACTACTACAGCCCCTACCCTGGCTACCCTCCCAGCCTC
TACCAATACCCTTACTTCCATTCATCCCGTCGGCCCTATGCCTCGCCACTGCTCAATGGGCTCTCTATGC
CACCCGCACACAGCCCCAGCAGCAACTGGGACCAGCCTGTGTACACCACCCTGACCCGACCCTGA

Translation (464 aa):
MLDMSEARAQPPCSPSGTASSMSHVEDSDSDAPPSPAGSEGLGRAGGGGRGDTAEAADERFPACIRDAVS
QVLKGYDWSLVPMPVRGGGGGTLKAKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLL
SESEKRPFVEEAERLRVQHKKDHPDYKYQPRRRKSVKTGRSDSDSGTELGHHPGGPMYKADAVLGEAHHH
SDHHTGQTHGPPTPPTTPKTDLHQASNGSKQELRLEGRRLVDSGRQNIDFSNVDISELSSEVISNMDTFD
VHEFDQYLPLNGHSALPTEPSQATASGSYGGASYSHSGATGIGASPVWAHKGAPSASASPTEAGPLRPQI
KTEQLSPSHYNDQSHGSPGRADYGSYSAQASVTTAASATAASSFASAQCDYTDLQASNYYSPYPGYPPSL
YQYPYFHSSRRPYASPLLNGLSMPPAHSPSSNWDQPVYTTLTRP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH