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Report for CCDS15423.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15423.1 Public Mus musculus 1 Fmo4 23 108 98 CCDS HistoryNCBI Gene:226564Re-query CCDS DB by CCDS ID:15423.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 15423.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028014.9 ENSMUSP00000028014.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028014.9Link to Ensembl Protein Viewer:ENSMUSP00000028014.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000028014Re-query CCDS DB by Protein ID:ENSMUSP00000028014
Original member Current member EBI ENSMUST00000111525.7 ENSMUSP00000107150.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111525.7Link to Ensembl Protein Viewer:ENSMUSP00000107150.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111525Re-query CCDS DB by Protein ID:ENSMUSP00000107150
Original member Current member NCBI NM_144878.1 NP_659127.1 Accepted alive Link to Nucleotide Sequence:NM_144878.1Link to Protein Sequence:NP_659127.1Re-query CCDS DB by Nucleotide ID:NM_144878Re-query CCDS DB by Protein ID:NP_659127Link to BLAST:NP_659127.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659127.1 560 Q8VHG0 560 100% 0 0

Chromosomal Locations for CCDS 15423.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 162793958 162794393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 162795052 162795121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 162798799 162799151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 162803573 162803769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 162805154 162805296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 162807521 162807683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 162808261 162808449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 162809790 162809921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1683 nt):
ATGGCCAAGAAGGTGGCAGTGATTGGAGCTGGCGTAAGTGGCCTGTCCTCTATCAAGTGCTGCTTGGACG
AGAACCTGGAGCCCACCTGCTTTGAGAGAACTAGCGACTTTGGCGGACTGTGGAAGTTTGCTGACACTTC
CGAGGATGGGATGACCAGGGTTTACAGGTCACTAGTGACAAATGTCTGCAAAGAAATGTCATGTTACAGT
GACTTCCCATTCCGAGAAGATTACCCCAACTTCATGAGCCATGAGAAATTCTGGGACTATCTCAGAGAAT
TTGCTGAGCACTTTGGCCTGCTGAGATATATTCGGTTTAAGACAACTGTGCTCAGTGTAACAAAGCGCCC
AGACTTCTCTGAAACTGGCCAGTGGGATGTTGTCACAGAGACAGAAGGCAAACGGGACAGGGCAGTATTT
GACGCTGTTATGGTTTGCACTGGGCAATTCCTGAGCCCACATTTACCTCTGGAGTCCTTTCCTGGAATCC
ATAAGTTTAAAGGACAGATCCTGCACAGCCAAGAGTACAGGATTCCAGATGCCTTCCGGGGCAAGCGCAT
CCTGGTGGTTGGTCTTGGAAACACTGGCGGGGACATAGCAGTAGAGCTCAGTGAAATAGCAGCTCAGGTG
TTTCTCAGCACTAGAACTGGCACCTGGGTCCTAAGCCGCTCCTCACCTGGTGGCTACCCTTTCAATATGA
TACAAACAAGATGGCTCAATTTCCTTGTACGAGTTCTGCCTTCACGTTTTATAAACTGGACTCACGAGAG
GAAAATGAATAAAATACTTAACCATGAGAATTATGGATTAAGCATTGCAAAAGGGAAAAAACCAAAATTT
ATTGTAAATGATGAACTACCAACCTGTATACTTTGTGGGAAAGTCACCATGAAAACCAGCGTGAAGGATT
TTACAGAATCTTCTGTCATCTTTGAAGATGGTACAACAGAAGCCAACATTGATGTAGTGATCTTCACTAC
AGGATATGAATTTTCTTTTCCCTTTTTTGAAGAACCTCTCAAAAGCCTTTGTACAAAGAAGATCATCCTA
TACAAGCGAGTCTTTCCCCCAAATTTGGAGAGAGCAACATTAGCCATTATTGGCCTGATCAGCCTTAATG
GGTCGATCTTAGTGGGCACAGAGTTCCAAGCACGATGGGCCACAAGAGTATTCAAAGGACTCTGTAGCAT
ACCTCCATCTCAGAAACTGATGGCCGAAGCCACTAAAACGGAGCAGCTCATTAAAAGGGGTGTGATTAAA
GATACCAGCCAAGACAAACTGGACTTCATTACCTACATGGACGAGCTCACTCAGTGCATAGGCGCGAAGC
CCAGCATTCCACTTTTGTTCATTAAGGATCCAAGATTGGCTTGGGAAGTTTTCTTTGGACCATGTACCCC
TTACCAATACCGCCTAGTGGGCCCTGGAAGATGGGATGGAGCCAGAAATGCCATCCTGACACAGTGGGAC
AGGACTCTGAAACCATTAAAAACTCGAATTGTTCCTAAGTCCCCCGAGCCTACCTCCCTCTCACATTACT
TAATAGCTTGGGGGGCACCTGTCCTGCTTGTCTCTCTTTTACTTATCTACAAATCTTCACATTTTCTTGA
ATTGGTACAAGGTAAGCTACCGAGAAGATTTCCCCCTTACCGATTACTGTGGTACATGCCCCAGAACTCA
TGA

Translation (560 aa):
MAKKVAVIGAGVSGLSSIKCCLDENLEPTCFERTSDFGGLWKFADTSEDGMTRVYRSLVTNVCKEMSCYS
DFPFREDYPNFMSHEKFWDYLREFAEHFGLLRYIRFKTTVLSVTKRPDFSETGQWDVVTETEGKRDRAVF
DAVMVCTGQFLSPHLPLESFPGIHKFKGQILHSQEYRIPDAFRGKRILVVGLGNTGGDIAVELSEIAAQV
FLSTRTGTWVLSRSSPGGYPFNMIQTRWLNFLVRVLPSRFINWTHERKMNKILNHENYGLSIAKGKKPKF
IVNDELPTCILCGKVTMKTSVKDFTESSVIFEDGTTEANIDVVIFTTGYEFSFPFFEEPLKSLCTKKIIL
YKRVFPPNLERATLAIIGLISLNGSILVGTEFQARWATRVFKGLCSIPPSQKLMAEATKTEQLIKRGVIK
DTSQDKLDFITYMDELTQCIGAKPSIPLLFIKDPRLAWEVFFGPCTPYQYRLVGPGRWDGARNAILTQWD
RTLKPLKTRIVPKSPEPTSLSHYLIAWGAPVLLVSLLLIYKSSHFLELVQGKLPRRFPPYRLLWYMPQNS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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