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Report for CCDS23649.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23649.1 Public Mus musculus 9 Zfp105 23 108 98 CCDS HistoryNCBI Gene:22646Re-query CCDS DB by CCDS ID:23649.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23649.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000051667.13 ENSMUSP00000079840.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000051667.13Link to Ensembl Protein Viewer:ENSMUSP00000079840.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000051667Re-query CCDS DB by Protein ID:ENSMUSP00000079840
Original member Current member NCBI NM_009544.2 NP_033570.2 Accepted alive Link to Nucleotide Sequence:NM_009544.2Link to Protein Sequence:NP_033570.2Re-query CCDS DB by Nucleotide ID:NM_009544Re-query CCDS DB by Protein ID:NP_033570Link to BLAST:NP_033570.2

Chromosomal Locations for CCDS 23649.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 122925108 122925296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122926310 122926454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122929600 122930840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1575 nt):
ATGACTACAGAATTGAAAGAGACCATGGGCAGAGCCTCTTGGGACCCAGAGAAGGTGAAAATGGAAGAAG
ATGATGAAAGTGTCATAAGTCAGGCATCCAGCCAACAAGTGTACTATGAGAACGACAAGGACTGTGCCCC
AGGGGAGGGTCCTTATGGAAGCATCAGTGTATCAGAAGATGAGGAAAAGGGTCAGGAAATGTTCCGGGAA
ATGGCAGTGGTGCTAAAAGCAACACAGGAGGCTGCTGCTGCTTCACCCTTTGGGAGCTACTCGTTGGCAG
GGACTCTGGCCGAGAGTCAAATCCTGGAGCTTCATGGGAACCCAACCCCAACAGGTGCCAAAAGCAAGAA
CCTAGAGTTATTGATTCCTAAAAAGGAGATAAGTGATGACTCGGAGAAGCCCCCCATGATTTTAGGAAGA
ATCCAGAAAGGTGACCTTCAAGGACCTGAGTTAGGAGAATCTTGTGAAAAGGGAAATGTGTTAAAAGGGC
TGAGGATAAAGGAGGAAAAGGGAGATTTGGGAGAAGCAACAGTGAAAGACTGTCCATTGTCTGAAAGCTT
CCGAGACGAGGAAGAATCCAAGAAGTCTAGGGGGAAATACAGCCTCAGATCTACTCCTGGTAAAAATCAG
AAAATACAGCCCGGGCAAAAACCGTTTACATGTAGTGAGTGTGGGAAAGGCTTTAGTCAGAGTGCAAATC
TTGTTGTGCATCAACGAATCCACACTGGGGAGAAGCCCTTCGAGTGTCATGAGTGTGGGAAGGCCTTCAT
TCAAAGTGCAAACCTCGTTGTGCATCAGAGGATCCACACTGGACAGAAACCCTATGTCTGTGGAAAATGT
GGGAAGGCTTTCACTCAGAGTTCAAATCTGACTGTCCATCAGAAAATCCACTCCTTAGAAAAAACCTTTA
AGTGTAGTGAATGTGAGAAAGCCTTCAGTTACAGCTCGCAACTTGCTCGGCACCAGAAAGTCCATATAAC
CGAGAAATGCTATGAATGCAATGAGTGTGGAAAAACCTTCACTCGAAGCTCCAACCTCATCGTCCATCAG
AGAATCCACACTGGGGAGAAGCCTTTCGCCTGCAGTGACTGTGGCAAAGCCTTTACTCAGAGTGCAAATC
TTATTGTGCATCAGAGAAGCCACACTGGTGAGAAGCCGTATAAGTGTAAAGACTGTGAAAAAGCCTTCAG
TTGTTTTTCTCACCTTATTGTGCACCAGAGAATTCACACTGCAGAGAAACCTTATGACTGCAGCGAATGT
GGGAAAGCCTTTAGTCAGCTATCTTGCCTTATTGTCCACCAGAGAATTCATAGTGGAGATCTCCCTTATG
TGTGTAATGAGTGTGGGAAGGCCTTCACTTGTAGCTCATACCTACTCATTCATCAAAGAATCCATAATGG
GGAAAAGCCTTATTCGTGTAATGAGTGTGGGAAGGCCTTCAGACAGAGGTCGAGCCTCACTGTCCACCAG
CGAACCCACACAGGAGAGAAGCCCTATGAATGTGCAAAGTGTGGTGCAGCTTTTATTTCTAACTCACACC
TCATGAGACATCACAGAACCCATCTTGTTGAATAG

Translation (524 aa):
MTTELKETMGRASWDPEKVKMEEDDESVISQASSQQVYYENDKDCAPGEGPYGSISVSEDEEKGQEMFRE
MAVVLKATQEAAAASPFGSYSLAGTLAESQILELHGNPTPTGAKSKNLELLIPKKEISDDSEKPPMILGR
IQKGDLQGPELGESCEKGNVLKGLRIKEEKGDLGEATVKDCPLSESFRDEEESKKSRGKYSLRSTPGKNQ
KIQPGQKPFTCSECGKGFSQSANLVVHQRIHTGEKPFECHECGKAFIQSANLVVHQRIHTGQKPYVCGKC
GKAFTQSSNLTVHQKIHSLEKTFKCSECEKAFSYSSQLARHQKVHITEKCYECNECGKTFTRSSNLIVHQ
RIHTGEKPFACSDCGKAFTQSANLIVHQRSHTGEKPYKCKDCEKAFSCFSHLIVHQRIHTAEKPYDCSEC
GKAFSQLSCLIVHQRIHSGDLPYVCNECGKAFTCSSYLLIHQRIHNGEKPYSCNECGKAFRQRSSLTVHQ
RTHTGEKPYECAKCGAAFISNSHLMRHHRTHLVE


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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