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Report for CCDS48613.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48613.1 Public Mus musculus 10 Syde1 23 108 98 CCDS HistoryNCBI Gene:71709Re-query CCDS DB by CCDS ID:48613.1Re-query CCDS DB by GeneID:71709See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48613.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040580.6 ENSMUSP00000043085.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040580.6Link to Ensembl Protein Viewer:ENSMUSP00000043085.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000040580Re-query CCDS DB by Protein ID:ENSMUSP00000043085
Original member Current member NCBI NM_027875.1 NP_082151.1 Accepted alive Link to Nucleotide Sequence:NM_027875.1Link to Protein Sequence:NP_082151.1Re-query CCDS DB by Nucleotide ID:NM_027875Re-query CCDS DB by Protein ID:NP_082151Link to BLAST:NP_082151.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082151.1 737 Q9DBZ9 737 99.5929% 0 3

Chromosomal Locations for CCDS 48613.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 78585502 78585911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78586090 78586315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78586959 78587119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78587331 78587457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78588707 78588921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78589101 78589745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78589902 78590243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78591802 78591889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2214 nt):
ATGGCCGAGCCGCTGCTCAGGAAGACCTTCTCCCGCCTGCGGGGTCGTGAGAAACTTCCTCGAAAAAAGT
CAGAAGCCAAGGACCGCGGCCACCCAGCCCAGCGCTCAGAGCCCAAACCCCCAGAACCAGAACCTCGTGT
CCTTGAAGGGTCTCAGGCTGGAGCAGAGGTACCACCCAGCCCCGAGACACCTCGAAGCCCCACTCGGGGG
GCCTACCTGCAAAGCCTGGAGCCCAGTAGCCGCCGATGGGTGCTAGGAGGGGCTAAACCACCAGAGGAGA
TCTCTTTGGGGCCTAGGACACCTAGCAGTGGGGAGCCTGCTGGTGAGATTTGGTACAACCCCATCCCTGA
AGAAGACCCCAGACCACCCGCACCTGAGCCCTTGGGATCACAGCTAGCTTCCTCTGAGCCAGAAGGCCCC
AACATCCAAGGTGCAGCCCCTACCAGCCCCCCTACCAAAACCTCCCGTACCAAGTCCCCAGGCCCTGCCA
GGCGCCTCTCAATGAAGATGAAAAAGCTGCCAGAGCTCCGGCGCCGCCTAAGCCTAAGAAGTACTCGCAC
AGGCCGGGATAGAGAGAGGACCGCCCCAGCAGGCTCTGTCATCAGCCGCTATCACCTGGACAGCAGTGTG
GGGACTCCTGGGCAGGCATCAGTGGCTGGAGGGTCTAGGAGCCCAAGGGGTGGGTACCTCAGCGATGGTG
ATTCGCCTGAGCGTCCTGGAGGACCACCATCACCCACTGCCTTCCGGCCCTATGAAGTGGGTCCATCGGC
CCGGACTCCTCCAGCTGCCCTCTGGGGGCGTCTCAGCCTGCACCTGTATGGGCTAGGGGGTCTGCGACCA
AGTCCCGGGGCTACTCCACGAGATCTCTGCTGCCTTCTCCAAGTGGATGGGGTAGCTCGGGCCCGCACAG
GGCCACTTCGAAGCGGACCAGACTTCCTGAGGCTGGACCACACCTTCCACCTAGAGCTGGAGGCTGCTCG
TCTGCTGCGGGCCTTGGTACTTGCATGGGACCCTGGTGTGAGGCGGCACCGGCCCTGTGCCCAGGGCACT
GTGCTATTGCCAACCATCTTTCGAGGGTGCCAAGCGCAACAACTGGCCGTTCGACTTGAACCCCAGGGAC
TTCTTTACGCCAAGCTAACATTGTCGGAACAGCAAGAAGCCCCTGCCACAGCAGAGCCCCGTGTTTTCGG
GCTCCCTCTGCAGCTTCTGGTAGAACGTGAGCAGTCCCCAGGCCAGGTGCCTCTCATCATCCGAAAGTGT
GTGGGGCAGATCGAATGCCGAGGGCTGCGGGTAGTGGGGCTGTACCGTCTGTGTGGCTCAGCAGCAGTGA
AGAAAGAGCTTCGAGATGCCTTTGAGCAGGACAGTGCGGCTGTGTGCCTCTCTGAAGATGTGTACCCTGA
TATCAATGTCATCACAGGCATCCTCAAGGATTATCTTCGAGAACTGCCTACTCCACTCATCACCCAGCCC
CTCTACCAGGTGGTGCTGGAAGCCATGGCCCAAGGACACCCAAGCAGGGCTTCCCTGGGTCCTGAGGGCA
CCAGAGGGCTCCTCAGATGCCTGCCAGATGTGGAGAGGGCCACCCTGACGCTTCTTCTGGACCATCTGCG
CCTTGTCTCTTCCTTCCACACCCACAACCGCATGACCCCGCAGAACTTGGCAGTGTGCTTCGGACCAGTG
TTGCTACCAGCGAGACAAACACCCTCTCGGCCCCGGCTCCGTAGCTCTGGCCCAGGAGTCACCAGTGCTG
TGGACTTCAAGCGCCACATTGAAGTCCTGCATTACCTGTTACAGTCTTGGCCAGATACCAGACGGCCCTC
AGATACCCCAGATGGCGCAGTCGCACCGTATTTGAGGCCCAAAAGACAGCCACCTCTGCACTTGCCGCTG
GCGGGCCCAGAAGTGGTGACTCGGCCTCGGGGCCGCGGAGGCCCCGAAAGTCCCCCAAGCAACCGCTATG
CAGGCGACTGGAGTGTGTGCGGAGGCGATTTACTGCCCTGTGGGCGGGACTTCCTGTCCGGGCCTGACTA
TGACCATGTGACAGGCAGCGACAGTGAGGAAGATGATGATGAGACTGGAGAGCCGAGGGGCACTACCGAC
TTCGAAGATGAGTTTGATGCACCCTTCAACCCACACCTGAATCTCAAAGACTTTGATGCCCTCATCCTGG
ATCTGGAGAGAGAACTCTCCAAGCAGATCAATGTGTGCCTCTGA

Translation (737 aa):
MAEPLLRKTFSRLRGREKLPRKKSEAKDRGHPAQRSEPKPPEPEPRVLEGSQAGAEVPPSPETPRSPTRG
AYLQSLEPSSRRWVLGGAKPPEEISLGPRTPSSGEPAGEIWYNPIPEEDPRPPAPEPLGSQLASSEPEGP
NIQGAAPTSPPTKTSRTKSPGPARRLSMKMKKLPELRRRLSLRSTRTGRDRERTAPAGSVISRYHLDSSV
GTPGQASVAGGSRSPRGGYLSDGDSPERPGGPPSPTAFRPYEVGPSARTPPAALWGRLSLHLYGLGGLRP
SPGATPRDLCCLLQVDGVARARTGPLRSGPDFLRLDHTFHLELEAARLLRALVLAWDPGVRRHRPCAQGT
VLLPTIFRGCQAQQLAVRLEPQGLLYAKLTLSEQQEAPATAEPRVFGLPLQLLVEREQSPGQVPLIIRKC
VGQIECRGLRVVGLYRLCGSAAVKKELRDAFEQDSAAVCLSEDVYPDINVITGILKDYLRELPTPLITQP
LYQVVLEAMAQGHPSRASLGPEGTRGLLRCLPDVERATLTLLLDHLRLVSSFHTHNRMTPQNLAVCFGPV
LLPARQTPSRPRLRSSGPGVTSAVDFKRHIEVLHYLLQSWPDTRRPSDTPDGAVAPYLRPKRQPPLHLPL
AGPEVVTRPRGRGGPESPPSNRYAGDWSVCGGDLLPCGRDFLSGPDYDHVTGSDSEEDDDETGEPRGTTD
FEDEFDAPFNPHLNLKDFDALILDLERELSKQINVCL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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