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Report for CCDS23816.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23816.1 Public Mus musculus 10 Scml4 23 108 98 CCDS HistoryNCBI Gene:268297Re-query CCDS DB by CCDS ID:23816.1Re-query CCDS DB by GeneID:268297See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23816.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000063063.13 ENSMUSP00000053157.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000063063.13Link to Ensembl Protein Viewer:ENSMUSP00000053157.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000063063Re-query CCDS DB by Protein ID:ENSMUSP00000053157
Original member Current member NCBI NM_172938.3 NP_766526.3 Accepted alive Link to Nucleotide Sequence:NM_172938.3Link to Protein Sequence:NP_766526.3Re-query CCDS DB by Nucleotide ID:NM_172938Re-query CCDS DB by Protein ID:NP_766526Link to BLAST:NP_766526.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766526.3 408 Q80VG1-1 408 100% 0 0

Chromosomal Locations for CCDS 23816.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 42912076 42912231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 42924054 42924183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 42930404 42930604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 42934953 42935147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 42946869 42947141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 42955889 42956034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 42957619 42957744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1227 nt):
ATGCAGACACAGAGGGTGCCAGGGAGGAAACGTGGCCGGCCTCCACTTCACTCCACACGGGTGCAGATGG
CCGTCCATAACCTCTATTCTGCTTCTGCTGCCTCTGTGCCAGCAGTGACAATCCCAAAGAAGAGAGGACG
GAAGCCCAGGTACAAGATCAAGTCTCCAGTGCTCATGACTCCCTTGGCCCTGTCACCTCCACGGAGTACC
CCGGAACCCGATCTCAGCTCCATCCCTCAGGATGCAGCCACCATTCCCAGCCTGGTGGTCCCAGAGGCTC
TCACAGTATGCCTCTACATAAACAAACAGGCCGATGTGGGGCCGTACCTGGAGAGGAGGAAGCTACAGCA
GCTTCCGGAGCGCCTGGGACCTGAGCGGCCCGCCACCGTCCTGCAGCAGGCGGTGCAAGCATGCATCGAT
TGTGCGCACCAGCCTCGGCTGGTCTTCTCCCTCGTCAAGCAGGGATACCGAGGCGAGCTGGTGTCAGTCT
CTGCTTCCTTCGATGGAAAGCAGCACTTGAGGAGTCTGCCTGTGGTGAACAGTGTGGGCTATGTCCTCCG
TTTCCTGACCAAACTGTGCCGCAGCCTCCTGTGTGACAACCTCTTCAGCCACCTGCCTTTTCCCGGGAGC
ATCGGCGCCTCTGACAAGGCGCAGGAGAGAGAGGATGGGAGGACTGAGTCAGCCAAGGTAGCCACGGCTG
AAGAGTGTCTGGCAAACGCAGTGGGCATGAACCGCTACGCCATGGACTTTAGCCACAGGGGCTCCGTAAC
CCACTCTTCCTCACTGTACAAGAGGCTGACCTGCGGAGACAGCCACCTTGCCGGAGGCCCCGCCACCACC
ACCAGTGGTTCCCGCACCAACCCTGTTCCCTCTGGAGGTTCGTCGTCACCTGGACTGAGGCTGCCAGCCT
CCAGCCCCAAGAGGAATGGAACAGCCATCGAAGGAAACAGATGTGCCCCGAGCCCCTCTCCGGAGGTGCA
GGATACCAGGCGACCAAGCAGCAGAAACCCTTCTACCTGGACCGTGGAGGACGTGGTCCGGTTTGTGAAA
GATGCTGATCCCGAGGCTCTGGGACCTCATGTGGAGCTCTTCAGAAAGCACGAGATTGATGGCAATGCCT
TGTTGTTGCTGAGGAGCGACATGATCATGAAGTACCTGGGACTGAAGCTGGGACCCGCACTGAAACTCTG
CTATCACATTGACAAGCTAAAGCAAGCTAAATTCTAA

Translation (408 aa):
MQTQRVPGRKRGRPPLHSTRVQMAVHNLYSASAASVPAVTIPKKRGRKPRYKIKSPVLMTPLALSPPRST
PEPDLSSIPQDAATIPSLVVPEALTVCLYINKQADVGPYLERRKLQQLPERLGPERPATVLQQAVQACID
CAHQPRLVFSLVKQGYRGELVSVSASFDGKQHLRSLPVVNSVGYVLRFLTKLCRSLLCDNLFSHLPFPGS
IGASDKAQEREDGRTESAKVATAEECLANAVGMNRYAMDFSHRGSVTHSSSLYKRLTCGDSHLAGGPATT
TSGSRTNPVPSGGSSSPGLRLPASSPKRNGTAIEGNRCAPSPSPEVQDTRRPSSRNPSTWTVEDVVRFVK
DADPEALGPHVELFRKHEIDGNALLLLRSDMIMKYLGLKLGPALKLCYHIDKLKQAKF


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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