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Report for CCDS25427.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25427.1 Public Mus musculus 11 Cnp 23 108 98 CCDS HistoryNCBI Gene:12799Re-query CCDS DB by CCDS ID:25427.1Re-query CCDS DB by GeneID:12799See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25427.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000103120.4 ENSMUSP00000099409.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103120.4Link to Ensembl Protein Viewer:ENSMUSP00000099409.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000103120Re-query CCDS DB by Protein ID:ENSMUSP00000099409
Original member Current member NCBI NM_009923.2 NP_034053.2 Accepted alive Link to Nucleotide Sequence:NM_009923.2Link to Protein Sequence:NP_034053.2Re-query CCDS DB by Nucleotide ID:NM_009923Re-query CCDS DB by Protein ID:NP_034053Link to BLAST:NP_034053.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034053.2 420 P16330-1 420 100% 0 0

Chromosomal Locations for CCDS 25427.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 100575066 100575068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100576236 100576905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100578913 100579052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100580347 100580796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1263 nt):
ATGAACACAAGCTTTACCCGCAAAAGCCACACATTCCTGCCCAAGCTCTTCTTCAGGAAAATGTCATCCT
CAGGAGCAAAGGAGAAGCCAGAGCTGCAGTTCCCTTTCCTTCAAGATGAGGACACGGTGGCTACCCTCCA
CGAGTGCAAGACGCTATTCATCCTGCGCGGCCTGCCGGGCAGCGGCAAGTCCACACTGGCTCGGCTCATC
CTGGAGAAGTACCACGACGGCACCAAGATGGTGTCCGCTGATGCTTACAAGATCATCCCTGGCTCTCGGG
CAGACTTCTCCGAGGCGTACAAGCGTCTAGACGAGGACCTGGCTGGCTACTGCCGCCGGGACATCAGGGT
TCTTGTGCTTGATGATACCAACCACGAGCGGGAGCGGCTGGATCAGCTTTTTGAAATGGCAGACCAGTAT
CAGTACCAGGTGGTGCTGGTGGAGCCCAAGACAGCGTGGCGACTAGACTGTGCCCAGCTCAAGGAGAAGA
ACCAATGGCAGCTGTCGGCCGATGACCTGAAGAAGCTGAAGCCCGGGCTGGAGAAGGACTTTCTGCCACT
CTACTTTGGCTGGTTCCTGACCAAAAAGAGTTCTGAGACCCTCCGAAAAGCTGGCCAGGTCTTTCTGGAG
GAGCTGGGGAATCACAAGGCCTTCAAGAAAGAGCTTCGACACTTTATTTCTGGAGATGAACCCAAGGAGA
AGCTTGAGCTGGTCAGCTACTTTGGAAAGAGACCTCCAGGTGTGCTGCACTGTACAACCAAATTCTGTGA
CTACGGGAAGGCCGCTGGGGCAGAAGAATACGCCCAGCAGGAGGTGGTGAAGAGATCGTATGGCAAGGCC
TTCAAACTGTCCATCTCTGCTCTCTTTGTGACACCCAAGACAGCTGGGGCCCAGGTGGTGCTGACCGATC
AGGAGCTGCAGTTGTGGCCCAGTGATCTGGACAAGCCATCTGCCTCCGAGGGCCTGCCCCCAGGGAGCCG
AGCTCACGTCACCCTAGGCTGTGCGGCCGACGTGCAGCCAGTGCAGACGGGTCTTGACCTCTTAGATATT
TTACAACAGGTGAAGGGGGGCAGCCAAGGTGAGGCGGTGGGTGAGCTCCCCCGGGGCAAGCTCTATTCCC
TGGGCAAAGGGCGATGGATGCTGAGCCTGACTAAGAAGATGGAGGTCAAGGCCATCTTCACGGGGTACTA
TGGGAAGGGCAAACCTGTGCCCATACATGGCAGCCGGAAGGGGGGTGCCATGCAGATCTGCACCATCATC
TGA

Translation (420 aa):
MNTSFTRKSHTFLPKLFFRKMSSSGAKEKPELQFPFLQDEDTVATLHECKTLFILRGLPGSGKSTLARLI
LEKYHDGTKMVSADAYKIIPGSRADFSEAYKRLDEDLAGYCRRDIRVLVLDDTNHERERLDQLFEMADQY
QYQVVLVEPKTAWRLDCAQLKEKNQWQLSADDLKKLKPGLEKDFLPLYFGWFLTKKSSETLRKAGQVFLE
ELGNHKAFKKELRHFISGDEPKEKLELVSYFGKRPPGVLHCTTKFCDYGKAAGAEEYAQQEVVKRSYGKA
FKLSISALFVTPKTAGAQVVLTDQELQLWPSDLDKPSASEGLPPGSRAHVTLGCAADVQPVQTGLDLLDI
LQQVKGGSQGEAVGELPRGKLYSLGKGRWMLSLTKKMEVKAIFTGYYGKGKPVPIHGSRKGGAMQICTII


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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