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Report for CCDS18875.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18875.1 Public Mus musculus 4 Zbtb17 23 108 98 CCDS HistoryNCBI Gene:22642Re-query CCDS DB by CCDS ID:18875.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18875.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000006377.12 ENSMUSP00000006377.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000006377.12Link to Ensembl Protein Viewer:ENSMUSP00000006377.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000006377Re-query CCDS DB by Protein ID:ENSMUSP00000006377
Original member Current member NCBI NM_009541.2 NP_033567.2 Accepted alive Link to Nucleotide Sequence:NM_009541.2Link to Protein Sequence:NP_033567.2Re-query CCDS DB by Nucleotide ID:NM_009541Re-query CCDS DB by Protein ID:NP_033567Link to BLAST:NP_033567.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033567.2 794 Q60821 794 100% 0 0

Chromosomal Locations for CCDS 18875.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 141461771 141461975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141462535 141462723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141463267 141463407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141463673 141463795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141464237 141464478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141464560 141464702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141464789 141465089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141465349 141465436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141465524 141465640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141465722 141465842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141465977 141466107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141466348 141466557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141466674 141466763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141466843 141467126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2385 nt):
ATGGATTTCCCCCAGCACAGCCAGCGTGTCTTGGAGCAGCTGAACCAGCAGCGGCAACTGGGCCTCCTCT
GTGACTGCACCTTTGTGGTGGACGGCGTTGACTTCAAGGCTCACAAGGCGGTGCTGGCAGCTTGCAGCGA
GTACTTCAAGATGCTCTTTGTGGACCAGAAGGACGTGGTGCACCTAGACATCAGTAATGCGGCAGGCCTG
GGGCAGGTGCTGGAGTTCATGTACACTGCTAAGCTGAGCCTTAGCCCTGAGAACGTGGACGATGTTCTGG
CCGTGGCCAGCTTCCTCCAGATGCAGGATATTGTCACGGCCTGCCACACGCTCAAGTCCCTCGCTGAGCC
GAGCAGCACCACTGGGGAGAGCGCAGACGCCTCAGCTGTGGAAGGAGGAGACAAGAGAGCCAAAGACGAG
AAGGCCGCTGCCACCATGTTGAGCAGGCTGGACCAAGCAAGAGGCAGCTCCTCCACAGGCCCGGGCAGAG
AACTCAAGGAGGAGCGGGGTGGCCAGGCAGAAAGTGCATCCAGTGGCGCAGAGCAGACGGAGAAGGCAGA
CGCTCCCCGGGAGCCTCCACCTGTGGAGCTCAAGCCGGACCCCACAAGCAGCATGGCGGCTGCAGAAGCC
GAAGCCTTATCAGAGAGCTCAGAGCAAGAAATGGAAGTGGAGCCAGCCAGCAAAGGAGAAGACGGACAAG
AGGAAGAGGGTGCAGGGCCTGCCACAGTCAAGGAAGAGGGGATGCATCTGGATAACGGGGAGCCTCCTGA
GGAGAATGAAGAGTCTGCCGGCACAGATTCTGGGCAGGAGCTTGGCATGGAGGGTCAGAACCTGCGCTCG
GGCACCTACGGGGATCGCACTGAGTCCAAGGCTTACGGCTCCATCATCCACAAGTGCGAGGACTGCGGGA
AGGAGTTCACGCACACAGGGAACTTCAAACGGCACATCCGCATCCACACGGGGGAGAAACCTTTCTCATG
CAGGGAGTGCAGCAAGGCTTTCTCGGACCCTGCAGCGTGCAAGGCTCATGAGAAGACACACAGCCCGTTG
AAACCCTATGGGTGTGAGGAGTGTGGCAAGAGCTACAGGCTCATCAGCCTGCTGAACCTGCATAAGAAGA
GGCACTCCGGGGAGGCGCGCTACCGCTGCGGGGACTGTGGCAAGCTCTTCACCACTTCAGGCAACCTCAA
GCGCCACCAGCTGGTACACAGTGGCCAGAAACCCTACCAGTGCGACTACTGTGGCCGCTCCTTCTCTGAC
CCCACCTCTAAGATGCGCCACCTGGAGACTCACGACACCGACAAGGAACACAAGTGTCCTCACTGCGACA
AAAAGTTCAACCAGGTGGGGAACCTGAAGGCCCACTTGAAGATCCACATTGCCGATGGCCCTCTTAAGTG
CCGGGAGTGCGGGAAGCAGTTCACCACCTCAGGGAACCTCAAGCGGCACCTGCGGATCCACAGTGGGGAG
AAGCCGTACGTATGCACCCACTGTCAGCGGCAGTTTGCCGACCCAGGCGCGCTACAGCGGCACGTCCGGA
TCCACACGGGTGAGAAGCCGTGCCAGTGTGTGATATGTGGTAAGGCCTTTACCCAAGCCAGCTCCCTCAT
CGCCCATGTACGCCAACACACGGGGGAGAAGCCCTACGTCTGTGAACGCTGTGGCAAGAGATTTGTCCAG
TCCAGCCAGTTGGCCAACCACATCCGTCACCATGACAACATCCGACCGCACAAGTGCAGCGTGTGTAGCA
AGGCCTTCGTGAATGTGGGGGACCTGTCCAAGCACATTATCATCCACACCGGAGAGAAGCCTTATTTGTG
TGACAAATGTGGCCGTGGTTTCAACCGGGTAGACAACCTGCGTTCTCATGTAAAGACCGTGCATCAGGGC
AAGGCGGGCATCAAGATCCTGGAGCCAGAAGAGGGTGGTGAGGTCAGCGTGGTCACTGTGGACGACATGG
TCACCCTGGCCACTGAGGCTCTGGCAGCGACAGCGGTCACTCAGCTAACAGTGGTACCAGTGGGGGCCGC
AGTGACAGCTGACGAGACGGAAGTACTCAAAGCTGAGATCAGCAAAGCTGTCAAGCAAGTGCAGGAAGAA
GACCCCAACACCCACATCCTCTACGCTTGTGATTCCTGTGGGGACAAGTTCCTGGATGCCAATAGCCTAG
CCCAGCATGTTCGGATCCACACAGCCCAGGCACTGGTCATGTTCCAGACGGATGCGGACTTCTACCAGCA
GTATGGGCCAGGCAGCACGTGGCCAGCCGGGCAGATGCTGCAGGCTGGAGAGCTCGTCTTCCGTCCTAGG
GATGGGACTGAGGGCCAACCCACACTGGCAGAAAGTCCACCCACAGCTCCTGATTGCCTACCACCTGCCG
AGTGA

Translation (794 aa):
MDFPQHSQRVLEQLNQQRQLGLLCDCTFVVDGVDFKAHKAVLAACSEYFKMLFVDQKDVVHLDISNAAGL
GQVLEFMYTAKLSLSPENVDDVLAVASFLQMQDIVTACHTLKSLAEPSSTTGESADASAVEGGDKRAKDE
KAAATMLSRLDQARGSSSTGPGRELKEERGGQAESASSGAEQTEKADAPREPPPVELKPDPTSSMAAAEA
EALSESSEQEMEVEPASKGEDGQEEEGAGPATVKEEGMHLDNGEPPEENEESAGTDSGQELGMEGQNLRS
GTYGDRTESKAYGSIIHKCEDCGKEFTHTGNFKRHIRIHTGEKPFSCRECSKAFSDPAACKAHEKTHSPL
KPYGCEECGKSYRLISLLNLHKKRHSGEARYRCGDCGKLFTTSGNLKRHQLVHSGQKPYQCDYCGRSFSD
PTSKMRHLETHDTDKEHKCPHCDKKFNQVGNLKAHLKIHIADGPLKCRECGKQFTTSGNLKRHLRIHSGE
KPYVCTHCQRQFADPGALQRHVRIHTGEKPCQCVICGKAFTQASSLIAHVRQHTGEKPYVCERCGKRFVQ
SSQLANHIRHHDNIRPHKCSVCSKAFVNVGDLSKHIIIHTGEKPYLCDKCGRGFNRVDNLRSHVKTVHQG
KAGIKILEPEEGGEVSVVTVDDMVTLATEALAATAVTQLTVVPVGAAVTADETEVLKAEISKAVKQVQEE
DPNTHILYACDSCGDKFLDANSLAQHVRIHTAQALVMFQTDADFYQQYGPGSTWPAGQMLQAGELVFRPR
DGTEGQPTLAESPPTAPDCLPPAE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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