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Report for CCDS19748.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19748.1 Public Mus musculus 5 Ywhag 23 108 98 CCDS HistoryNCBI Gene:22628Re-query CCDS DB by CCDS ID:19748.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19748.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055808.5 ENSMUSP00000051223.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055808.5Link to Ensembl Protein Viewer:ENSMUSP00000051223.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000055808Re-query CCDS DB by Protein ID:ENSMUSP00000051223
Original member Current member EBI ENSMUST00000198270.1 ENSMUSP00000143631.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000198270.1Link to Ensembl Protein Viewer:ENSMUSP00000143631.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000198270Re-query CCDS DB by Protein ID:ENSMUSP00000143631
Original member Current member NCBI NM_018871.3 NP_061359.2 Accepted alive Link to Nucleotide Sequence:NM_018871.3Link to Protein Sequence:NP_061359.2Re-query CCDS DB by Nucleotide ID:NM_018871Re-query CCDS DB by Protein ID:NP_061359Link to BLAST:NP_061359.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061359.2 247 P61982 247 100% 0 0

Chromosomal Locations for CCDS 19748.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 135910995 135911651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135934323 135934409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (744 nt):
ATGGTGGACCGCGAGCAACTGGTGCAGAAAGCCCGGCTGGCCGAGCAGGCGGAGCGCTACGACGATATGG
CCGCGGCCATGAAGAACGTGACCGAGCTGAACGAACCACTGTCCAATGAGGAACGGAACCTCCTGTCGGT
GGCCTACAAGAACGTGGTGGGGGCTCGCCGCTCCTCCTGGAGGGTCATCAGCAGCATCGAGCAGAAGACG
TCTGCGGACGGCAACGAGAAGAAGATCGAGATGGTCCGAGCCTACCGGGAGAAGATCGAGAAGGAGCTGG
AGGCCGTGTGCCAGGACGTGCTGAGCCTGCTGGACAACTACCTGATCAAGAACTGCAGCGAGACCCAGTA
CGAGAGCAAGGTGTTCTACCTGAAGATGAAAGGGGACTATTACCGTTACCTGGCAGAAGTGGCCACCGGG
GAGAAGAGGGCGACCGTGGTGGAGTCGTCTGAGAAGGCCTACAGCGAAGCCCACGAGATCAGCAAGGAGC
ACATGCAGCCCACCCACCCCATCCGGCTGGGCCTGGCGCTCAACTACTCGGTTTTCTACTATGAGATCCA
GAACGCCCCGGAGCAAGCGTGCCACCTGGCCAAGACCGCCTTCGACGACGCCATCGCCGAGCTCGACACT
CTGAACGAGGACTCCTACAAGGACTCCACTCTGATCATGCAGCTGCTCCGAGACAACCTCACGCTCTGGA
CGAGCGACCAGCAAGACGACGACGGCGGTGAAGGCAACAACTAA

Translation (247 aa):
MVDREQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWRVISSIEQKT
SADGNEKKIEMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQYESKVFYLKMKGDYYRYLAEVATG
EKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAIAELDT
LNEDSYKDSTLIMQLLRDNLTLWTSDQQDDDGGEGNN


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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