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Report for CCDS25960.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25960.1 Public Mus musculus 12 Actr10 23 108 98 CCDS HistoryNCBI Gene:56444Re-query CCDS DB by CCDS ID:25960.1Re-query CCDS DB by GeneID:56444See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25960.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021479.5 ENSMUSP00000021479.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021479.5Link to Ensembl Protein Viewer:ENSMUSP00000021479.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000021479Re-query CCDS DB by Protein ID:ENSMUSP00000021479
Original member Current member NCBI NM_019785.2 NP_062759.2 Accepted alive Link to Nucleotide Sequence:NM_019785.2Link to Protein Sequence:NP_062759.2Re-query CCDS DB by Nucleotide ID:NM_019785Re-query CCDS DB by Protein ID:NP_062759Link to BLAST:NP_062759.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062759.2 417 Q9QZB7 417 100% 0 0

Chromosomal Locations for CCDS 25960.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 70937955 70938031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 70940798 70940870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 70942259 70942341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 70943409 70943517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 70947452 70947559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 70949704 70949771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 70952950 70953029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 70954619 70954654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 70956273 70956352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 70956600 70956673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 70958032 70958113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 70959841 70960042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 70961867 70962048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1254 nt):
ATGCCGCTCTACGAGGGCCTTGGGAGCGGCGGCGAGAAGACAGCAGTCGTGATCGACCTAGGAGAAGCTT
TCACCAAGTGTGGATTCGCAGGAGAAACTGGTCCACGATGTATAATTCCTAGTGTGATAAAAAGAGCTGG
CATGTCTAAGCCAATCAAAGTTGTTCAGTATAATATCAATACAGAAGAATTATATTCCTACCTAAAGGAA
TTCATCCACATACTGTATTTCAGGCATCTGTTGGTGAATCCCAGAGACCGCCGCGTTGTGGTTATCGAGT
CGGTGTTATGTCCTTCCCACTTCAGAGAGACTCTGACTCGTGTTCTTTTTAAATATTTTGAGGTTCCATC
TGTCCTACTTGCTCCAAGTCATCTGATGGCACTGCTGACGCTTGGAATTAATTCGGCCATGGTCCTGGAT
TGTGGATATAGGGAAAGCCTGGTGTTGCCTATCTATGAAGGCATCCCAATACTGAATTGCTGGGGAGCAC
TGCCGTTAGGAGGAAAAGCTCTCCACAAGGAGTTGGAAACTCAGCTGTTGGAACAATGTACTGTTGACAC
TGGTGCAGCTAAAGGACAGAGCCTTCCCTCAGTGATGGGTTCAGTTCCAGAAGGTGTGCTAGAAGATATT
AAAGTGCGCACGTGCTTTGTCAGTGATCTGAAGCGTGGACTGCAAATCCAAGCAGCAAAATTTAATATTG
ATGGGAATAATGAGCGTCCCACTCCACCTCCAAATGTTGACTATCCATTGGATGGAGAGAAAATTTTACA
TGTGCTTGGATCAATCAGAGATTCAGTTGTGGAAATCCTTTTTGAACAAGATAATGAGGAGAAGTCAGTT
GCCACTTTAATTTTGGATTCCCTTTTACAGTGCCCAATAGACACCAGGAAGCAACTGGCAGAGAATTTGG
TAATCATCGGTGGCACATCTATGTTGCCAGGCTTTCTCCACAGATTGCTTGCAGAAATACGGTATTTGGT
AGAAAAGCCAAAGTACAAAAAGACACTTGGCACCAAGAACTTCCGAATTCATACTCCACCTGCAAAAGCT
AATTGTGTGGCCTGGTTGGGAGGGGCTGTTTTTGGAGCATTGCAAGACATTCTTGGGAGCCGCTCCATTT
CAAAGGAATACTATAACCAGACGGGCCGCATACCTGACTGGTGCTCTCTCAACAACCCTCCCCTGGAAAT
GATGTTTGATGTGGGGAAAGCGCAACCACCGCTGATGAAAAGGGCATTTTCCACTGAGAAATAA

Translation (417 aa):
MPLYEGLGSGGEKTAVVIDLGEAFTKCGFAGETGPRCIIPSVIKRAGMSKPIKVVQYNINTEELYSYLKE
FIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVLFKYFEVPSVLLAPSHLMALLTLGINSAMVLD
CGYRESLVLPIYEGIPILNCWGALPLGGKALHKELETQLLEQCTVDTGAAKGQSLPSVMGSVPEGVLEDI
KVRTCFVSDLKRGLQIQAAKFNIDGNNERPTPPPNVDYPLDGEKILHVLGSIRDSVVEILFEQDNEEKSV
ATLILDSLLQCPIDTRKQLAENLVIIGGTSMLPGFLHRLLAEIRYLVEKPKYKKTLGTKNFRIHTPPAKA
NCVAWLGGAVFGALQDILGSRSISKEYYNQTGRIPDWCSLNNPPLEMMFDVGKAQPPLMKRAFSTEK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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