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Report for CCDS26047.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26047.1 Public Mus musculus 12 Abcd4 23 108 98 CCDS HistoryNCBI Gene:19300Re-query CCDS DB by CCDS ID:26047.1Re-query CCDS DB by GeneID:19300See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26047.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021666.5 ENSMUSP00000021666.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021666.5Link to Ensembl Protein Viewer:ENSMUSP00000021666.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000021666Re-query CCDS DB by Protein ID:ENSMUSP00000021666
Original member NCBI NM_008992.2 NP_033018.2 Updated not alive Link to Nucleotide Sequence:NM_008992.2Link to Protein Sequence:NP_033018.2Re-query CCDS DB by Nucleotide ID:NM_008992Re-query CCDS DB by Protein ID:NP_033018
Current member NCBI NM_008992.3 NP_033018.2 Accepted alive Link to Nucleotide Sequence:NM_008992.3Link to Protein Sequence:NP_033018.2Re-query CCDS DB by Nucleotide ID:NM_008992Re-query CCDS DB by Protein ID:NP_033018Link to BLAST:NP_033018.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033018.2 606 O89016 606 100% 0 0

Chromosomal Locations for CCDS 26047.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 84603091 84603159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84603294 84603409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84603949 84604025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84604333 84604385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84604981 84605030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84605348 84605384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84605872 84605963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84606100 84606308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84608570 84608659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84608806 84608897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84608975 84609096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84609379 84609473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84611721 84611771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84612325 84612450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84612780 84612896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84613905 84614044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84615077 84615204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84615326 84615444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84617283 84617320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1821 nt):
ATGGCGGTCCCGGGACCCACGGCCCGAGCTGGTGCCAGGCCCAGATTAGATCTGCAACTTGTCCAGAGGT
TCGTGAGGATACAGAAGGTTTTCTTTCCTTCTTGGTCATCACAGAATGTCTTAATGTTCATGACGCTCTT
GTGCGTGACCCTCCTGGAGCAACTGGTGATCTACCAAGTTGGCTTGATCCCCAGTCAGTATTATGGAGTC
TTGGGAAACAAAGACCTGGATGGATTTAAGGCACTGACCTTGCTGGCCGTGACACTTATTGTCCTCAACT
CCACCCTGAAGAGCTTTGACCAGTTCACCTGCAACCTGCTGTACGTGAGCTGGAGGAAGGACCTCACGGA
GCACCTGCACCACCTGTACTTCCGGGCCCGCGTGTACTACACCCTCAACGTGCTGCGGGACGACATTGAT
AATCCGGACCAGCGAATCAGCCAGGATGTGGAGCGATTCTGCCGCCAGCTCAGCAGCGTGACCAGCAAGC
TGATCATTTCCCCCTTCACTCTTACCTACTACACTTACCAGTGCTTCCAAAGCACAGGCTGGCTCGGGCC
TGTGAGCATCTTTGGATATTTCATCGTGGGGACCATGGTGAACAAAACTTTGATGGGGCCCATCGTGACG
AAGCTGGTGCAGCAGGAGAAGCTGGAGGGGGATTTTAGGTTCAAGCACATGCAGATTCGAGTGAATGCAG
AGCCTGCGGCTTTCTATAGAGCTGGGCTCGTCGAGCACATGAGGACAGACCGCAGGCTGCAGAGACTCCT
TCAGACCCAGAGAGAGCTGATGTCCAGGGAGCTCTGGCTGTACATTGGTATCAACACCTTTGACTATCTG
GGCAGCATCCTGAGTTATGTCGTCATCGCTATCCCCATTTTCAGTGGGGTCTATGGAGATTTGAGCCCCA
CAGAGCTTAGCACCCTGGTCAGCAAGAATGCCTTTGTGTGCATCTACCTCATCAGCTGCTTCACCCAGCT
CATTGACCTGTCCACCACACTCTCGGATGTTGCCGGTTACACACACAGGATTGGAGAGCTTCAGGAGGCC
CTGCTGGACATGTCCCGAAAATCACAAGACTGTGAAGCCCTAGGCGAGAGTGAGTGGGACTTGGACAAAA
CCCCAGGGTGTCCAACAACAGAGCCATCAGACACAGCTTTTCTGCTCGATCGGGTTTCCATATTGGCCCC
CTCCTCTGACAAGCCCCTGATCAAGGACTTGAGCTTGAAGATCTGTGAGGGGCAGAGTCTGCTCATCACA
GGCAACACGGGCACTGGCAAGACCTCCCTGCTGCGGGTGCTGGGAGGCCTGTGGGAGGGCATGAAAGGCT
CAGTGCAGATGCTGGCTGATTTTGGGCCCCACGGGGTGCTGTTCCTGCCTCAGAAGCCATTCTTCACTGA
TGGGACACTTCGGGAGCAGGTGATATATCCCCTGAAGGAGATCTACCCTGACTCAGGTTCTGCGGACGAT
GAGAGGATTGTGAGGTTCTTGGAATTGGCAGGCCTGTCCAGCTTGGTGGCAAGGACTGGAGGTCTGGACC
AGCAGGTGGATTGGAACTGGTATGATGTCCTGTCCCCAGGGGAGATGCAAAGACTCTCCTTCGCCCGTCT
CTTCTACCTGCAGCCCAAGTATGCAGTGCTCGATGAAGCCACCAGTGCCCTGACAGAGGAAGCAGAGAGT
GAGCTCTACCGAATTGGTCAGCAACTGGGGATGACATTTATCAGCGTGGGACATCGTCCCAGCCTTGAGA
AGTTTCACTCCTGGGTTCTGAGACTCCACGGAGGAGGAAGCTGGGAGCTGACTAGAATCAAACTGGAATG
A

Translation (606 aa):
MAVPGPTARAGARPRLDLQLVQRFVRIQKVFFPSWSSQNVLMFMTLLCVTLLEQLVIYQVGLIPSQYYGV
LGNKDLDGFKALTLLAVTLIVLNSTLKSFDQFTCNLLYVSWRKDLTEHLHHLYFRARVYYTLNVLRDDID
NPDQRISQDVERFCRQLSSVTSKLIISPFTLTYYTYQCFQSTGWLGPVSIFGYFIVGTMVNKTLMGPIVT
KLVQQEKLEGDFRFKHMQIRVNAEPAAFYRAGLVEHMRTDRRLQRLLQTQRELMSRELWLYIGINTFDYL
GSILSYVVIAIPIFSGVYGDLSPTELSTLVSKNAFVCIYLISCFTQLIDLSTTLSDVAGYTHRIGELQEA
LLDMSRKSQDCEALGESEWDLDKTPGCPTTEPSDTAFLLDRVSILAPSSDKPLIKDLSLKICEGQSLLIT
GNTGTGKTSLLRVLGGLWEGMKGSVQMLADFGPHGVLFLPQKPFFTDGTLREQVIYPLKEIYPDSGSADD
ERIVRFLELAGLSSLVARTGGLDQQVDWNWYDVLSPGEMQRLSFARLFYLQPKYAVLDEATSALTEEAES
ELYRIGQQLGMTFISVGHRPSLEKFHSWVLRLHGGGSWELTRIKLE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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