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Report for CCDS50387.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50387.1 Public Mus musculus 19 Myrf 23 108 98 CCDS HistoryNCBI Gene:225908Re-query CCDS DB by CCDS ID:50387.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50387.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000189897.1 ENSMUSP00000139601.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000189897.1Link to Ensembl Protein Viewer:ENSMUSP00000139601.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000189897Re-query CCDS DB by Protein ID:ENSMUSP00000139601
Original member NCBI NM_001033481.1 NP_001028653.1 Updated not alive Link to Nucleotide Sequence:NM_001033481.1Link to Protein Sequence:NP_001028653.1Re-query CCDS DB by Nucleotide ID:NM_001033481Re-query CCDS DB by Protein ID:NP_001028653
Current member NCBI NM_001033481.2 NP_001028653.1 Accepted alive Link to Nucleotide Sequence:NM_001033481.2Link to Protein Sequence:NP_001028653.1Re-query CCDS DB by Nucleotide ID:NM_001033481Re-query CCDS DB by Protein ID:NP_001028653Link to BLAST:NP_001028653.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028653.1 1112 Q3UR85-3 1112 100% 0 0

Chromosomal Locations for CCDS 50387.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 10210385 10210465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10210599 10210673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10211708 10211813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10212146 10212220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10212442 10212529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10214059 10214310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10214760 10214927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10215017 10215105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10215742 10215810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10216061 10216149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10216420 10216492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10216618 10216778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10217420 10217529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10218148 10218259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10218464 10218664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10219038 10219128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10219522 10219632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10219795 10219871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10221178 10221373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10223117 10223240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10223317 10223567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10224372 10224651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10225449 10225510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10228653 10228916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10229020 10229107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10240559 10240604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3339 nt):
ATGGAGGTGGTGGACGAGACCGAAGCGCTGCAGCGCTTCTTCGAAGGCCATGACATCAGCGGTGCCCTGG
AGCCCTCCAATATAGACACCAGTATCCTGGAGGAGTACATTGGCAAAGAGGACGCCTCTGATCTCTGCTT
CCCTGAGATCTCTGCACCAGCCAGCACTGCCTCCTTCCCCCACGGGCCACCGGCCATTCCCGGCTCCAGC
GGGCTCCACCATCTGAGCCCCCCTGGGAGCGGACCATCCCCTGGGCGCCATGGCCCCCTCCCACCCCCGA
CCTACGGCACCCCACTCAACTGCAACAACAACAACGGCATGGGCACCGCCCCTAAGCCCTTCCTGGGGGG
CTCTGGGCCTCCCATCAAAGCAGAGCCAAAGGCCCCCTATGCCCCAGGCACACTGCCAGACTCGCCCCCA
GACTCAGGCTCTGAGGCCTACTCCCCTCAGCAGGTGAATGACCCCCATCTTCTACGCACCATAACCCCGG
AGACTCTATGCCACGTGGGAGTTTCTTCCCGCCTGGAGCACCCGCCCCCACCTCCAGCCCACCTGCCAGG
CCCACCACCACCGCCACCTCCCCCACCTCACTACCCTGTCCTGCAACGGGACCTCTACATGAAGGCTGAG
CCCCCTGTACCCCCTTATGCTGCCATGGGGCCGGGTCTGGTGCCCCCCGAGCTCCATCACACCCAGCAGA
CCCAGGTGCTACACCAGCTGCTGCAACAGCATGGAGCTGAACTCCCTCCACACCCCTCTAAGAAGAGGAA
GCACTCTGAATCACCCCCCAACACCCTCAATGCCCAAATGCTGAACGGAATGATCAAGCAGGAACCTGGG
ACTGTCACAGCCTTGCCTCCACACCCTGCCAGAGCCCCATCCCCTCCATGGCCTCCTCAAGGCCCACTGT
CACCTGGCACTGGATCCTTGCCCCTCAGCATTGCCCGAGCCCAGACTCCACCCTGGCACCCGCCAGGTGC
ACCCTCCCCAGGCCTCCTGCAGGACAGTGACAGCCTCAGTGGCTCCTATTTGGACCCCAACTACCAATCC
ATCAAATGGCAGCCGCATCAGCAGAACAAGTGGGCGACCCTGTATGACGCTAACTACAAGGAGCTGCCTA
TGCTCACCTATCGTGTGGACGCTGACAAGGGCTTCAACTTTTCCGTGGGCGACGATGCTTTTGTGTGCCA
GAAGAAGAACCACTTCCAGGTGACCGTGTACATCGGCATGCTGGGGGAGCCCAAGTACGTCAAGACACCG
GAAGGCCTCAAGCCCCTGGACTGCTTCTATCTGAAGCTGCATGGTGTGAAGCTAGAGGCCCTGAACCAGT
CTATCAACATTGAGCAGTCACAGTCAGACAGAAGCAAGAGGCCCTTCAACCCCGTCACGGTCAATCTTCC
CCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAGACCACTGCCAACAACATGCGC
AAGAAGGGCAAGCCCAACCCTGACCAGAGGTATTTCATGCTGGTGGTGGCCCTCCAGGCACATGCACAGA
ACCAGAACTACACACTGGCAGCCCAGATCTCAGAGCGTATCATTGTGCGGGCCTCTAACCCAGGCCAGTT
TGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTG
GGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTA
TGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAGGTGGACACCACCGAGCAGCTGAAGAGGAT
CTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACC
GCACCGGAGACAGGTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGG
ATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAGGAGCGAATCTTCATGGA
GAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAG
CGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTT
TCAGCCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGC
CAATAAGTCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATA
GCTCTGGTGGTGGTCATGGCCTTCAGCGTGGTGTCTATGTCCACACTATATGTGCTGAGCCTGCGCTCTG
AAGAGGACCTGGTGGATGCTGATGGCAGGTCCAGCCAGAGCTTCGGGACCACACAGCTCCGACAGTCCTC
CATGACCACCGGACTACCAGGCACACAGCCCTCTTTGCTGCTGGTTACCAAGTCAGCCTCGGGTCCAGCT
CTCCGTGCCTTGGACCTGTGCTCCAGCCAGCCCTGCCCCATCGTCTGCTGCTCTCCTCCCGTCTCCAGTC
CTGCTACAGATCCTGCCCTTGGCCCCACTCTTACTCCTACTCCAAGCCCCAGCTCTAACCCCAAGCACTC
AGGCCCTGGCCAGATGGCCCCACTGCCAGTCACCAACATCAGAGCCAAATCCTGGGGCATCTCAGCTAAT
GGCATCAGCTATTCCAAGCATTCCAAGAGCCTGGAACCTCTGGCCAGTCCTGTGGTCCCCTTTCCTGGAG
GGCAGAGCAAGACCAAGAACAGCCCCAGCTTCAATCTCCAAAGTCGAGCCCGCAGAGGAGCCCCGCAACC
CAGCCCAAGCCCTGCCCAATTCACACAGACCCAGGGCCAGCTAGACCCAGCGCCATCCCTGACCTCCATC
CAGCTGCTGGAGAATTCCATGCCTATCACTTCTCAGTACTGTGTGCCAGAAGGTGCTTGCAGGCTTGGCA
ACTTCACCTACCACATCCCTGTCAGCAGCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGAATTC
CTCCACCCCTGTGTCCGTGGTACTGTGCAGCCTGACATCGGAGGAGGAGCCCTGTGAGGAGGGAGGCTTT
TTGCAGAGGTTCCACCCGCATCAGGACACCCAGGGCACCTCTCATCAGTGGCCAGTAACCATCCTGTCCT
TCCGTGAATTCACATACCACTTCCGGGTGACATTGCTGGGTCAGGCCAACTGCAGCTCAGAGGCCATCGT
TCAGCCAGCCACCGACTACTACTTCCACTTCTACCGCCTGTGTGACTGA

Translation (1112 aa):
MEVVDETEALQRFFEGHDISGALEPSNIDTSILEEYIGKEDASDLCFPEISAPASTASFPHGPPAIPGSS
GLHHLSPPGSGPSPGRHGPLPPPTYGTPLNCNNNNGMGTAPKPFLGGSGPPIKAEPKAPYAPGTLPDSPP
DSGSEAYSPQQVNDPHLLRTITPETLCHVGVSSRLEHPPPPPAHLPGPPPPPPPPPHYPVLQRDLYMKAE
PPVPPYAAMGPGLVPPELHHTQQTQVLHQLLQQHGAELPPHPSKKRKHSESPPNTLNAQMLNGMIKQEPG
TVTALPPHPARAPSPPWPPQGPLSPGTGSLPLSIARAQTPPWHPPGAPSPGLLQDSDSLSGSYLDPNYQS
IKWQPHQQNKWATLYDANYKELPMLTYRVDADKGFNFSVGDDAFVCQKKNHFQVTVYIGMLGEPKYVKTP
EGLKPLDCFYLKLHGVKLEALNQSINIEQSQSDRSKRPFNPVTVNLPPEQVTKVTVGRLHFSETTANNMR
KKGKPNPDQRYFMLVVALQAHAQNQNYTLAAQISERIIVRASNPGQFESDSDVLWQRAQLPDTVFHHGRV
GINTDRPDEALVVHGNVKVMGSLMHPSDLRAKEHVQEVDTTEQLKRISRMRLVHYRYKPEFAASAGIEAT
APETGVIAQEVKEILPEAVKDTGDVVFANGKTIENFLVVNKERIFMENVGAVKELCKLTDNLETRIDELE
RWSHKLAKLRRLDSLKSTGSSGAFSHAGSQFSRAGSVPHKKRPPKLANKSSPAVPDQACISQRFLQGTII
ALVVVMAFSVVSMSTLYVLSLRSEEDLVDADGRSSQSFGTTQLRQSSMTTGLPGTQPSLLLVTKSASGPA
LRALDLCSSQPCPIVCCSPPVSSPATDPALGPTLTPTPSPSSNPKHSGPGQMAPLPVTNIRAKSWGISAN
GISYSKHSKSLEPLASPVVPFPGGQSKTKNSPSFNLQSRARRGAPQPSPSPAQFTQTQGQLDPAPSLTSI
QLLENSMPITSQYCVPEGACRLGNFTYHIPVSSSTPLHLSLTLQMNSSTPVSVVLCSLTSEEEPCEEGGF
LQRFHPHQDTQGTSHQWPVTILSFREFTYHFRVTLLGQANCSSEAIVQPATDYYFHFYRLCD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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