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Report for CCDS52822.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52822.1 Public Mus musculus 9 Lrrc49 23 108 98 CCDS HistoryNCBI Gene:102747Re-query CCDS DB by CCDS ID:52822.1Re-query CCDS DB by GeneID:102747See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52822.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114034.8 ENSMUSP00000109668.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114034.8Link to Ensembl Protein Viewer:ENSMUSP00000109668.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000114034Re-query CCDS DB by Protein ID:ENSMUSP00000109668
Original member Current member NCBI NM_001146046.1 NP_001139518.1 Accepted alive Link to Nucleotide Sequence:NM_001146046.1Link to Protein Sequence:NP_001139518.1Re-query CCDS DB by Nucleotide ID:NM_001146046Re-query CCDS DB by Protein ID:NP_001139518Link to BLAST:NP_001139518.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139518.1 686 Q91YK0-1 686 99.8542% 0 1

Chromosomal Locations for CCDS 52822.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 60587688 60587891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60593606 60593759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60598086 60598195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60601303 60601488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60602579 60602816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60610258 60610421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60615094 60615177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60621569 60621716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60649480 60649541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60666289 60666432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60671295 60671361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60677080 60677283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60680069 60680171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60685035 60685122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60687139 60687195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60687812 60687859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2061 nt):
ATGATTCCCGGAAAATATCGCTCCGTTTCTGGCCGAGCTGCAAATAACGTGAACTGTGGACTTCATCTGG
TTATTCAAACGTCGTCACTTTCTGACAAAAACAAAGTTGAATTCAGGCTTAACAGAGAAACACCACCATT
TCCTGGTAGACTGTTACAGCATGACCTGGAGAGGAACTACTCAAGCAGGCAAGGTGACCACATTAGTCTG
GTGAGCTCATCCATGCCGGCGTTTCCTATTCTCCAGCGCTCTTCTGAAGAGAAAACACTTTACTCAGACA
GGCTGACCCTAGAAAGACAAAAGTTGACTGTGTGCCCTATCATCGACGGGGAAGAGCACCTTCGTTTGTT
GAACTTTCAGCACAATTTTATAACTCGGATCCAAAATATTTCTAATCTACAGAGGCTAATATTCTTGGAC
TTATATGATAACCAGATTGAAGAAATTAGTGGACTTTCTACTCTGAAATCCCTTCGTGTCCTCCTGTTAG
GGAAAAACAGAATCAAGAAAATCTCAAATCTGGAGAATCTAAAAAATTTAGATGTCTTGGACCTTCATGG
AAATCAGATTACCAAAATTGAAAATGTTAATCATTTGTGTGATTTGAGAGTTCTAAACCTTGCCAGGAAT
CTCTTGAGTCATGTTGACAATCTCAACGGCCTGGATTCACTAACGGAACTTAACCTTCGGCACAACCAGA
TCACCTTTGTGAGAGATGTGGATAATTTGCCCTGCCTCCAACGCCTCTTCCTCAGCTTCAACAATATAAC
TAGCTTTGAAAGTGTTTCCTGCCTTGCCGAGTCAACTTCCCTCTCGGACATCACCTTTGATGGCAACCCA
ATAGCTCAAGAGTCATGGTACAAACACACGGTCCTTCAGAATATGATGCAGCTGCGCCAGCTAGACATGA
AGAGAATCACGGAAGAAGAAAGACGCGTGGCATCTGTTGTGGCCAAAAAAGAGGAGGAGAAGAAGAGGGA
GAGTCACAAGCAGTCCTTGCTGAAGGAGAAGAAAAGGTTAACCATTAACAATGTCGCTCGAAAGTGGGAC
TTGCAGCAGCGAGTAGCCAACATTGCCAGCACTCAGGACAGAAAGGACTCGGAGTCTCCGCCTCAGGAAT
CCTGTCAGCTCGACGGAGGCAACATCTCTGCCTTTCCAGAGGAAGCAGGGTCTCTAGATGCAGGGCTCAG
CAGTGCGTTACAAGGCTTGTCTGTCACAGAAACACACTTGGTGGAGATAGACGGAGAAACCCTCTCACTG
TACGGCTCAGGGGCGCTGGAATGCCTGGATCGAAACTGGAGTGTTCAAACAGCCGGCATGGTCACCACGG
TCTCATTCACGTTCATCGAGTTTGATGAAATTGTCCAAGTACTTCCCAAACTGAAGATGAAGTTTCCAAA
TTCTCTGCACCTTAAATTCAGGGAGACCAACCTTGTGATGCTGCAGCAGTTCAATGCCCTGGCACAGCTG
CGTCGGGTTGACCAGTTGACAATCGATCCTCAGGGAAACCCAGTGGTCAACTTTACACTCTGGAAGTACT
ACGTGCTGTTCAGGCTCAGCCACTTCAGCATGCAGAAAATAAATGGAACAGAGGTGACTCAAAATGACAT
GATAATGGCTGAAAGGCTCTTTGGAATCTTAGCACATGTAGCATCCTCCGAGCTGCCCCAGTACCGCATG
ATTTCAATTCTGGGTGATGCCAGGAAAAAGCAATTCCGATATCTACTGGAAAGCAAAGGTAAAAAGCCTG
GCATCATCTGTGAGGAGACCAGTGACAGCAAGAGGTTCTTGGGGGAAAACACGAACCGCGCTACCCTGAA
TTACACCACCCGAGAATTCTACCACGAGAAGCTGGAAGAAATAAAGGACAAGAAGAAGTTCTGCAGGTTG
TATGTAGAAGACCTGGTGAAGGAAGCCACAGCCATCAACATGAAAAACGAGGCTCTGCAGAAGCTGTGGC
CACAGATGTTCATCGAGCTTGTGAGAGACGCTGTCATAGAGATCCGCAGCAAGGATTCCTACATGAAACT
CTGCCTGCAGCAGATCACTGACCAGAAATAG

Translation (686 aa):
MIPGKYRSVSGRAANNVNCGLHLVIQTSSLSDKNKVEFRLNRETPPFPGRLLQHDLERNYSSRQGDHISL
VSSSMPAFPILQRSSEEKTLYSDRLTLERQKLTVCPIIDGEEHLRLLNFQHNFITRIQNISNLQRLIFLD
LYDNQIEEISGLSTLKSLRVLLLGKNRIKKISNLENLKNLDVLDLHGNQITKIENVNHLCDLRVLNLARN
LLSHVDNLNGLDSLTELNLRHNQITFVRDVDNLPCLQRLFLSFNNITSFESVSCLAESTSLSDITFDGNP
IAQESWYKHTVLQNMMQLRQLDMKRITEEERRVASVVAKKEEEKKRESHKQSLLKEKKRLTINNVARKWD
LQQRVANIASTQDRKDSESPPQESCQLDGGNISAFPEEAGSLDAGLSSALQGLSVTETHLVEIDGETLSL
YGSGALECLDRNWSVQTAGMVTTVSFTFIEFDEIVQVLPKLKMKFPNSLHLKFRETNLVMLQQFNALAQL
RRVDQLTIDPQGNPVVNFTLWKYYVLFRLSHFSMQKINGTEVTQNDMIMAERLFGILAHVASSELPQYRM
ISILGDARKKQFRYLLESKGKKPGIICEETSDSKRFLGENTNRATLNYTTREFYHEKLEEIKDKKKFCRL
YVEDLVKEATAINMKNEALQKLWPQMFIELVRDAVIEIRSKDSYMKLCLQQITDQK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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