NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS49193.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49193.1 Public Mus musculus 12 Btbd6 23 108 98 CCDS HistoryNCBI Gene:399566Re-query CCDS DB by CCDS ID:49193.1Re-query CCDS DB by GeneID:399566See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 49193.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000002880.6 ENSMUSP00000002880.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000002880.6Link to Ensembl Protein Viewer:ENSMUSP00000002880.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000002880Re-query CCDS DB by Protein ID:ENSMUSP00000002880
Original member Current member NCBI NM_201646.2 NP_964008.2 Accepted alive Link to Nucleotide Sequence:NM_201646.2Link to Protein Sequence:NP_964008.2Re-query CCDS DB by Nucleotide ID:NM_201646Re-query CCDS DB by Protein ID:NP_964008Link to BLAST:NP_964008.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_964008.2 539 Q8K2J9-2 539 100% 0 0

Chromosomal Locations for CCDS 49193.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 112976606 112976982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112977059 112977149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112977253 112977371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112977504 112978536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1620 nt):
ATGCTGCTGCCGCTCGCCTGCCTGCATGGGCGGGTGGCGCAGTGCCTAACCTCCCTGCTGGTGCTCGCAG
AGCCGTTTCCCAGGCCCCGTCGCGGCGCGAAGGCGCGCGGCGCAGCACCGACCAGTGCGGAGCCCGCCCC
GGCAGTAGCGAAGATGGCCGCGGAACTGTACCCGCCCGCCAGTCCCTCTGCAGCTACTGCCACCGACATC
GCCAACAGCAACGCGGCAGGCGCAGCCGAGAGCACGAAGGTCGGGCTTTGCTGCCCGCCCTGCCTGGCAC
CCGCCCCGCTGCCGCCCTTGCCCGCGCCGCCCTTGCCAGACAACAACAATCCCGAGAGCCCCAACTGGCA
GTCCTTCCATCCTACGCTGCGCGAGAGGAATGCGCTCATGTTCAACAACGAGCTGATGGCTGACGTCCAC
TTCATCGTGGGGGCTCTGGGGGCTGCCAGGCGTGTGCCCGCCCACAAGTATGTCTTGGCTGTCGGCAGCT
CCGTCTTCTATGCCATGTTCTACGGGGATCTTGCGGAAGTGAAGTCAGAAATCCACATTCCCGATGTGGA
GCCTGCTGCCTTCTTGGTCTTGCTAAAGTACATGTACAGCGATGAGATCGACCTGGAGGCGGACACAGTG
CTTGCCACTCTGTATGCTGCTAAGAAGTACATCGTGCCTGCCCTGGCCAAGGCCTGCGTCAACTTTCTGG
AAACAAGTCTGGAAGCCAAAAATGCTTGTGTCCTGCTGTCCCAGAGCCGACTGTTTGAGGAGCCTGAACT
GACCCAGAGATGCTGGGAAGTCATTGATGCACAAGCTGAAATGGCCCTGAGGTCTGAAGGCTTCTGTGAA
ATTGACCGGCAGACACTGGAGATCATTGTGACCAGGGAGGCCCTCAATACCAAGGAGGCTGTGGTCTTCG
AGGCCGTCCTGAACTGGGCTGAGGCAGAATGTAAGAGACAGGGCCTCCCAGTCACTCCTCACAACAAGAG
GCATGTTTTGGGAAGAGCCCTCTACCTGGTCCGAATTCCAACTATGACCTTAGAGGAGTTTGCCAATGGT
GCCGCCCAGTCAGACATCCTGACCTTAGAAGAGACCCACAACATCTTCCTTTGGTACACTGCTGCCAAAA
AGCCCCTCCTTGACTTCCCCCTGACCAAGAGGAAGGGCCTTGCTCCACAAAGGTGCCACCGCTTCCAGTC
TTCTGCCTACCGAAGTAACCAGTGGAGGTACCGTGGACGCTGTGACAGCATCCAGTTTGCAGTGGACAGA
AGGGTGTTCATTGCTGGGCTGGGCTTGTATGGGTCCAGCTCTGGGAAGGCTGAGTACAGCGTCAAGATTG
AACTCAAGCGGCTAGGGATGGTCCTGGCTCAGAACCTCACCAAGTTTGTTTCAGACGGATCCAGCAACAC
TTTCCCAGTCTGGTTTGAGCACCCGGTCCAGGTGGAGCAGGACACCTTCTACACTGCCAGTGCTGTCCTG
GACGGCAGTGAGCTCAGCTACTTTGGGCAAGAAGGAATGACAGAGGTGCAGTGTGGGAAGGTAGCCTTCC
AGTTCCAGTGCTCCTCAGACAGTACCAATGGGACTGGAGTTCAGGGTGGACAGATTCCAGAGCTCATCTT
CTATGCCTGA

Translation (539 aa):
MLLPLACLHGRVAQCLTSLLVLAEPFPRPRRGAKARGAAPTSAEPAPAVAKMAAELYPPASPSAATATDI
ANSNAAGAAESTKVGLCCPPCLAPAPLPPLPAPPLPDNNNPESPNWQSFHPTLRERNALMFNNELMADVH
FIVGALGAARRVPAHKYVLAVGSSVFYAMFYGDLAEVKSEIHIPDVEPAAFLVLLKYMYSDEIDLEADTV
LATLYAAKKYIVPALAKACVNFLETSLEAKNACVLLSQSRLFEEPELTQRCWEVIDAQAEMALRSEGFCE
IDRQTLEIIVTREALNTKEAVVFEAVLNWAEAECKRQGLPVTPHNKRHVLGRALYLVRIPTMTLEEFANG
AAQSDILTLEETHNIFLWYTAAKKPLLDFPLTKRKGLAPQRCHRFQSSAYRSNQWRYRGRCDSIQFAVDR
RVFIAGLGLYGSSSGKAEYSVKIELKRLGMVLAQNLTKFVSDGSSNTFPVWFEHPVQVEQDTFYTASAVL
DGSELSYFGQEGMTEVQCGKVAFQFQCSSDSTNGTGVQGGQIPELIFYA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH