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Report for CCDS20259.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20259.2 Public Mus musculus 6 Lrrtm4 23 108 98 CCDS HistoryNCBI Gene:243499Re-query CCDS DB by CCDS ID:20259.2Re-query CCDS DB by GeneID:243499See the combined annotation on chromosome 6 in Sequence Viewer

Public Note for CCDS 20259.1
The coding region has been updated to represent an alternative 5' splice pattern, resulting in an N-terminus that is 1 aa shorter and is supported by transcript and homology data, and data in PMID:12676565.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 20259.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000074662.4 ENSMUSP00000074232.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074662.4Link to Ensembl Protein Viewer:ENSMUSP00000074232.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000074662Re-query CCDS DB by Protein ID:ENSMUSP00000074232
Original member Current member EBI ENSMUST00000126005.7 ENSMUSP00000117445.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000126005.7Link to Ensembl Protein Viewer:ENSMUSP00000117445.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000126005Re-query CCDS DB by Protein ID:ENSMUSP00000117445
Original member Current member NCBI NM_178731.5 NP_848846.3 Accepted alive Link to Nucleotide Sequence:NM_178731.5Link to Protein Sequence:NP_848846.3Re-query CCDS DB by Nucleotide ID:NM_178731Re-query CCDS DB by Protein ID:NP_848846Link to BLAST:NP_848846.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848846.3 518 Q80XG9-2 518 100% 0 0

Chromosomal Locations for CCDS 20259.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 80019703 80019706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 80021614 80023166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1557 nt):
ATGGGTTTCCGTCTAATCACGCAGCTGAAAGGCATGAGTGTGTTTCTGGTGCTATTTCCCACCCTGCTGC
TGGTTATGCTGACGGGGGCTCAGAGAGCTTGCCCAAAGAACTGCAGATGCGATGGCAAGATTGTATACTG
TGAGTCTCACGCCTTCGCAGACATCCCTGAGAACATTTCTGGAGGGTCACAAGGTTTATCCTTAAGGTTC
AACAGCATTCAGAAACTCAAATCCAATCAGTTTGCCGGCCTTAACCAGCTTATATGGCTTTATCTTGACC
ATAATTACATTAGCTCAGTGGACGAAGATGCCTTTCAAGGGATCCGCAGACTGAAAGAATTAATTCTAAG
CTCCAACAAAATTACCTATCTGCACAATAAAACATTTCACCCAGTCCCCAACCTCCGCAACCTGGATCTC
TCCTACAACAAACTTCAGACCTTACAGTCTGAGCAGTTTAAAGGCCTCCGGAAACTCATCATTTTGCACT
TGCGATCTAATTCTCTCAAGACCGTGCCCATACGGGTTTTTCAAGACTGCCGGAACCTTGACTTTCTGGA
TTTGGGTTATAATCGGCTCCGAAGCTTATCCCGAAACGCGTTTGCCGGTCTTCTGAAGTTAAAAGAGCTC
CACCTGGAGCATAATCAGTTTTCAAAGATCAACTTTGCTCATTTTCCTCGTCTCTTCAACCTGCGATCCA
TCTACCTGCAATGGAACAGGATCCGCTCTGTCAGTCAAGGCCTAACATGGACCTGGAGTTCCTTGCACAC
CTTGGATTTATCAGGGAATGACATCCAAGCAATCGAGCCTGGCACATTTAAATGCCTCCCCAATTTGCAA
AAATTGAATTTGGATTCCAACAAGCTCACCAATGTCTCCCAGGAGACTGTCAATGCATGGATATCCTTAA
TATCCATCACCTTGTCTGGAAACATGTGGGAATGTAGTCGGAGCATCTGTCCTCTATTCTACTGGCTGAA
GAATTTCAAAGGGAATAAAGAAAGTACCATGATATGTGCAGGGCCTAAGCACATACAGGGTGAGAAGGTT
AGCGATGCCGTGGAGACTTACAACATCTGCTCTGATGTCCAGGTGGTCAACACAGAACGATCACATCTGG
CGCCTCAAACTCCCCAGAAGCCCCCGTTCATCCCCAAACCTACCATCTTCAAACCGGATGCAGTCCCAGC
CACCCTAGAGGCAGTGAGCCCATCCCCGGGCTTTCAAATTCCAGGTACGGATCATGAGTACGAGCACGTG
TCGTTTCACAAAATCATCGCAGGGAGCGTGGCTCTGTTCCTCTCCGTGGCCATGATTCTCCTGGTGATCT
ATGTGTCTTGGAAACGGTACCCAGCCAGCATGAAACAACTCCAACAGCACTCACTTATGAAGAGGAGACG
GAAAAAGGCGAGGGAGTCGGAGAGACAGATGAATTCCCCTTTACAGGAATACTACGTGGACTACAAACCG
ACGAACTCTGAGACCATGGATATATCGGTTAATGGATCTGGTCCCTGCACATATACCATCTCTGGCTCCA
GGGAGTGTGAGGTATGA

Translation (518 aa):
MGFRLITQLKGMSVFLVLFPTLLLVMLTGAQRACPKNCRCDGKIVYCESHAFADIPENISGGSQGLSLRF
NSIQKLKSNQFAGLNQLIWLYLDHNYISSVDEDAFQGIRRLKELILSSNKITYLHNKTFHPVPNLRNLDL
SYNKLQTLQSEQFKGLRKLIILHLRSNSLKTVPIRVFQDCRNLDFLDLGYNRLRSLSRNAFAGLLKLKEL
HLEHNQFSKINFAHFPRLFNLRSIYLQWNRIRSVSQGLTWTWSSLHTLDLSGNDIQAIEPGTFKCLPNLQ
KLNLDSNKLTNVSQETVNAWISLISITLSGNMWECSRSICPLFYWLKNFKGNKESTMICAGPKHIQGEKV
SDAVETYNICSDVQVVNTERSHLAPQTPQKPPFIPKPTIFKPDAVPATLEAVSPSPGFQIPGTDHEYEHV
SFHKIIAGSVALFLSVAMILLVIYVSWKRYPASMKQLQQHSLMKRRRKKARESERQMNSPLQEYYVDYKP
TNSETMDISVNGSGPCTYTISGSRECEV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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