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Report for CCDS35814.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35814.1 Public Mus musculus 1 Capn8 23 108 98 CCDS HistoryNCBI Gene:170725Re-query CCDS DB by CCDS ID:35814.1Re-query CCDS DB by GeneID:170725See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35814.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048941.13 ENSMUSP00000047164.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048941.13Link to Ensembl Protein Viewer:ENSMUSP00000047164.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000048941Re-query CCDS DB by Protein ID:ENSMUSP00000047164
Original member Current member NCBI NM_130890.2 NP_570960.2 Accepted alive Link to Nucleotide Sequence:NM_130890.2Link to Protein Sequence:NP_570960.2Re-query CCDS DB by Nucleotide ID:NM_130890Re-query CCDS DB by Protein ID:NP_570960Link to BLAST:NP_570960.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_570960.2 703 Q91VA3-1 703 99.7155% 0 2

Chromosomal Locations for CCDS 35814.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 182565061 182565297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 182571933 182572002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 182596947 182597065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 182597575 182597708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 182598662 182598830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 182599542 182599625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 182602029 182602114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 182603647 182603721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 182604440 182604600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 182607594 182607769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 182611089 182611100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 182613326 182613537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 182614789 182614825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 182620150 182620218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 182622461 182622518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 182623919 182623983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 182627536 182627604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 182627978 182628056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 182628599 182628715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 182630102 182630160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 182632084 182632107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2112 nt):
ATGGCAGCCCTGGCAGCTGGAATATCCAAGCAACGTGCAGCTGCTCAGGGCCTTGGCTCTAACCAGAATG
CTGTGAAGTATCTGGGCCAGGACTTCGAGACCCTGAGAAAGCAATGCTTGAACTCAGGGGTCCTATTTAA
AGACCCGGAATTCCCGGCATGTCCGTCAGCTTTGGGCTACAGGGATCTTGGACCAGGCTCTGCAGAAACT
CAAGGCATCATATGGAAGCGACCCACGGAATTGTGTTCCAACCCTCAGTTTATCGTTGGTGGAGCCACAC
GCACAGACATCCGCCAGGGGGGTCTTGGAGACTGTTGGCTTCTGGCAGCCATTGCCTCCCTCACCTTGAA
TGAAAAGCTGCTTTATCGAGTGGTTCCTAGAGACCAGAGCTTCCAGAAGAACTATGCTGGCATTTTTCAT
TTCCAGTTCTGGCAGTATGGAGAGTGGGTGGAGGTGGTCATTGATGACCGGCTCCCCACCAAGAATGGAC
AGCTGCTCTTCCTACACTCCGAAGAAGGCAATGAGTTCTGGAGTGCTCTGCTGGAGAAAGCCTATGCCAA
GCTCAATGGTTCGTATGAGGCTCTTGCTGGAGGCTCCACAATTGAGGGGTTTGAGGATTTCACGGGTGGC
ATCTCTGAGTTTTATGACTTGAGGAAGCCTCCGGGCAATCTGTACTACACCATCCAGAAGGCCCTGCGCA
AAGGCTCTCTGCTGGGCTGCTCCATTGATGTCTCAAACGCAGCCGAAGCAGAAGCCACCACCAGGCAAAA
GCTGGTTAAGGGCCACGCATACTCTGTGACTGGAGTCGAAGAGGTGGATTTCCGTGGCCTCCCAGAGAAG
CTGATCAGGTTGAGGAACCCGTGGGGTGAAGTGGAGTGGACGGGAGCCTGGAGTGATAGTGCACCTGAGT
GGAATTACATAGATCCACAGAAGAAGGGAGAACTGGACAAGAGAGCAGAAGATGGGGAGTTCTGGATGTC
CTTTTCGGATTTCTTGAAGCAGTTCTCCCGACTAGAGATATGCAACCTGTCCCCAGACTCTCTGAGCAGT
GAGGAGATACACAAATGGAACCTGGTACTCTTCAACGGCCGCTGGACACGGGGTTCTACAGCCGGGGGCT
GCCAGAACTACCCAGCCACTTACTGGACCAACCCCCAGTTTAAAATCCATTTGGACGAGGTGGATGAGGA
CCAGGAGGAGGGCACCAGTGAACCCTGCTGTACAGTGCTGCTGGGTCTGATGCAGAAGAATCGCAGACGT
CAGAGGAGGATCGGCCAGGGCATGCTCAGCATAGGCTATGCTGTCTACCAGATTCCCAAGGAGCTGGAGA
ATCACACCGATGAGCACCTGGGCCGGGATTTCTTCCAGGGCCGCCAGCCCTCCACCTGCTCCAGCACCTA
CATGAACCTTCGAGAGGTGTCCAGCAGGGTCCAACTCCCCCCAGGACAGTACCTGGTGGTGCCATCCACC
TTTGAGCCCTTCAAGGACGGTGACTTCTGCCTGAGGGTGTTCTCGGAGAAGAAGGCCCAGGCTCTAGAAA
TTGGGGACGCTGTTGCTGGAGACCCACATGAGCCACATCCCCGTGACATGGATGGAGAAGATGAGCACTT
CTGGAGCCTGTCTGAGGAGTTTGCGGACAAGGATTCTGAAATCAGTGCTCACCAGCTCAAGAGGGTCCTG
AATGGATTGCTTTCTAAACGAACAGACATGAAATTTGACGGATTCAACATCAACACTTGCAGAGAAATGA
TCAGCCTGCTGGATGGTGATGGGACAGGAAGCCTGCGACCGGTGGAGTTCAAGACTCTCTGGCTGAAGAT
CTGCAAGTATCTGGAGATCTACCAAGAAATGGACCACAGCCGTGCAGGGACCATTGATGCTCACGAGATG
AGGACAGCTCTCAAGAAAGCAGGTTTCACCCTCAACAACCAGGTGCAGCAGACCATTGCCACGAGGTATG
CATGCAGCAAGCTTGGTGTTGACTTTGACGGCTTTGTGGCTTGTATGATCCGCCTGGAGATCCTGTTCAA
ATTGTTCAGACTCTTGGATAAGGACCAGAATGGCATTGTACAGCTCTCCCTGGCTGAGTGGCTGTGCTGT
GCACTGGTCTGA

Translation (703 aa):
MAALAAGISKQRAAAQGLGSNQNAVKYLGQDFETLRKQCLNSGVLFKDPEFPACPSALGYRDLGPGSAET
QGIIWKRPTELCSNPQFIVGGATRTDIRQGGLGDCWLLAAIASLTLNEKLLYRVVPRDQSFQKNYAGIFH
FQFWQYGEWVEVVIDDRLPTKNGQLLFLHSEEGNEFWSALLEKAYAKLNGSYEALAGGSTIEGFEDFTGG
ISEFYDLRKPPGNLYYTIQKALRKGSLLGCSIDVSNAAEAEATTRQKLVKGHAYSVTGVEEVDFRGLPEK
LIRLRNPWGEVEWTGAWSDSAPEWNYIDPQKKGELDKRAEDGEFWMSFSDFLKQFSRLEICNLSPDSLSS
EEIHKWNLVLFNGRWTRGSTAGGCQNYPATYWTNPQFKIHLDEVDEDQEEGTSEPCCTVLLGLMQKNRRR
QRRIGQGMLSIGYAVYQIPKELENHTDEHLGRDFFQGRQPSTCSSTYMNLREVSSRVQLPPGQYLVVPST
FEPFKDGDFCLRVFSEKKAQALEIGDAVAGDPHEPHPRDMDGEDEHFWSLSEEFADKDSEISAHQLKRVL
NGLLSKRTDMKFDGFNINTCREMISLLDGDGTGSLRPVEFKTLWLKICKYLEIYQEMDHSRAGTIDAHEM
RTALKKAGFTLNNQVQQTIATRYACSKLGVDFDGFVACMIRLEILFKLFRLLDKDQNGIVQLSLAEWLCC
ALV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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