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Report for CCDS28364.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28364.2 Public Mus musculus 17 Nox3 23 108 98 CCDS HistoryNCBI Gene:224480Re-query CCDS DB by CCDS ID:28364.2See the combined annotation on chromosome 17 in Sequence Viewer

Public Note for CCDS 28364.1
The coding region has been updated to shorten the N-terminus to one that is more supported by the available transcript and conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 28364.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115800.1 ENSMUSP00000111466.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115800.1Link to Ensembl Protein Viewer:ENSMUSP00000111466.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115800Re-query CCDS DB by Protein ID:ENSMUSP00000111466
Original member Current member NCBI NM_198958.2 NP_945196.2 Accepted alive Link to Nucleotide Sequence:NM_198958.2Link to Protein Sequence:NP_945196.2Re-query CCDS DB by Nucleotide ID:NM_198958Re-query CCDS DB by Protein ID:NP_945196Link to BLAST:NP_945196.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_945196.2 568 Q672J9 568 100% 0 0

Chromosomal Locations for CCDS 28364.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 3635265 3635391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3646476 3646600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3649982 3650128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3665821 3665983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3669764 3670017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3671748 3671840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3679711 3679840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3682907 3683088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3685864 3686009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3693929 3694013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3695263 3695373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3695488 3695583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3696154 3696201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1707 nt):
ATGCCGGTGTGCTGGATTCTGAACGAGAGTGGGTCCTTCGTGGTTGCTCTCTTATGGCTGGCAGTAAACG
CCTATCTGTTTATTGACACATTCTTCTGGTATACTGAAGAGGAGGCTTTCTTTTATACACGAGTTATTCT
GGGTTCCGCATTGGCATGGGCCCGGGCATCTGCCGTGTGCCTGAATTTTAACTGCATGCTAATTCTGTTA
CCTGTCAGTCGGAACTTCATTTCACTGGTGAGAGGAACAAGTGTGTGCTGTAGAGGACCATGGAGAAGAC
AACTAGACAAAAACCTCAACTTCCACAAACTCGTTGCCTACGGGATAGCTGTCAATTCAGTTATCCACAT
TGTGGCACACTTGTTCAACCTGGAGCGTTATCACCTGGGTCAGGCCAAGGATGCTGAAGGGCTGCTGGCT
GCACTTTCCAAACTTGGCGATGCCCCAAATGAGAGCTACCTCAATCCAGTCCGCACCTTTGATATGGGCA
CAACCACTGAGCTATTGATGACAGTGTCAGGAATTACTGGCCTGGGTATCTCTCTGGCTCTGGTCTTCAT
CATGACCTCTTCAACCGAATTCATCAGAAGGTCCTCTTATGAGCTCTTCTGGTACACACACCATATCTTT
GTCTTCTTCTTCATCAGTCTGGCCATCCACGGAGGAGGTCGCATCATTCGAGGCCAAACTCCAGAGAGTC
TCCGGCTGCACAATGTCACGTACTGCAGAGACCACTATGCTGAATGGCAGGCAGCTGCCTTATGCCCTGT
ACCTCAATTTTCTGGCAAGGAACCTTCGGCCTGGAAATGGGCTTTGGGTCCTGTGGTCTTGTATGCGTGT
GAAAGAATAATTAGGTTCTGGAGATCTCACCAAGAAGTTGTCATTACCAAGGTGGTGAGTCACCCATCTG
CAGTCCTGGAACTTCACATGAAGAAGCGAGACTTCAAGATGGCACCTGGACAGTACATCTTCATCCAGTG
CCCATCTGTCTCCCCCCTGGAGTGGCACCCCTTCACTCTCACCTCCGCTCCCCAGGAGGACTTCTTCAGT
GTACACATCAGAGCCTCAGGAGACTGGACAGAGGCGTTATTGAAGGCCTTTAGAGTAGAGGGACAGGCTC
CCAGTGAGCTCTGTAGCATGCCGAGGCTAGCAGTGGATGGGCCCTTTGGAGGCTCTCTGGCAGATGTATT
TCACTACCCCGTGAGCGTGTGCATTGCAACGGGAATTGGAGTCACTCCCTTCGCCTCTCTTCTGAAGTCT
GTGTGGTATAAGTGTTGTGAATCACAGAGCCTGCCTGAGCTGAGCAAGGTGTACTTCTATTGGATCTGCC
GGGATGCCGGAGCATTTGAGTGGTTTGCTGATCTGTTACTGTCACTGGAAACACGGATGAGTGAACAAGG
GAAGGCTCATTTACTGAGCTACCATATATATCTCACTGGCTGGGATGAAAACCAGGCAATTCACATAGCT
TTACACTGGGATGAAAGTCTGGATGTGATAACAGGCTTAAAGCAGAAGGCTTTCTATGGGCGACCCAACT
GGAACGACGAATTCAAGCAGATTGCCTACAATCACCCCAGCAGCAGCATTGGCGTGTTCTTCTGTGGATC
CAAAGCCATGTCAAAGACTCTTCAAAAGATGTGTCGTTTGTACTCATCTGTGGATCCGAGGGGCGTTCAT
TTCTATTACAACAAGGAAAACTTCTAG

Translation (568 aa):
MPVCWILNESGSFVVALLWLAVNAYLFIDTFFWYTEEEAFFYTRVILGSALAWARASAVCLNFNCMLILL
PVSRNFISLVRGTSVCCRGPWRRQLDKNLNFHKLVAYGIAVNSVIHIVAHLFNLERYHLGQAKDAEGLLA
ALSKLGDAPNESYLNPVRTFDMGTTTELLMTVSGITGLGISLALVFIMTSSTEFIRRSSYELFWYTHHIF
VFFFISLAIHGGGRIIRGQTPESLRLHNVTYCRDHYAEWQAAALCPVPQFSGKEPSAWKWALGPVVLYAC
ERIIRFWRSHQEVVITKVVSHPSAVLELHMKKRDFKMAPGQYIFIQCPSVSPLEWHPFTLTSAPQEDFFS
VHIRASGDWTEALLKAFRVEGQAPSELCSMPRLAVDGPFGGSLADVFHYPVSVCIATGIGVTPFASLLKS
VWYKCCESQSLPELSKVYFYWICRDAGAFEWFADLLLSLETRMSEQGKAHLLSYHIYLTGWDENQAIHIA
LHWDESLDVITGLKQKAFYGRPNWNDEFKQIAYNHPSSSIGVFFCGSKAMSKTLQKMCRLYSSVDPRGVH
FYYNKENF


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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