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Report for CCDS17016.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17016.1 Public Mus musculus 2 Ccn5 23 108 98 CCDS HistoryNCBI Gene:22403Re-query CCDS DB by CCDS ID:17016.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17016.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029188.7 ENSMUSP00000029188.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029188.7Link to Ensembl Protein Viewer:ENSMUSP00000029188.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000029188Re-query CCDS DB by Protein ID:ENSMUSP00000029188
Original member Current member NCBI NM_016873.2 NP_058569.2 Accepted alive Link to Nucleotide Sequence:NM_016873.2Link to Protein Sequence:NP_058569.2Re-query CCDS DB by Nucleotide ID:NM_016873Re-query CCDS DB by Protein ID:NP_058569Link to BLAST:NP_058569.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_058569.2 251 Q9Z0G4 251 99.6016% 0 1

Chromosomal Locations for CCDS 17016.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 163821322 163821381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 163825141 163825357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 163828852 163829109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 163832217 163832437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (756 nt):
ATGAGGGGCAACCCACTGATCCATCTTCTGGCCATTTCCTTCCTCTGCATTCTCTCAATGGTGTATGCCC
AGCTGTGCCCAGCACCCTGTGCCTGTCCTTGGACACCACCCCAGTGCCCACCGGGGGTACCCCTGGTGCT
GGATGGCTGTGGCTGCTGTCGAGTGTGTGCACGGAGGCTGGGGGAGTCCTGCGACCACCTGCATGTCTGC
GACCCCAGCCAGGGCCTGGTTTGTCAGCCTGGGGCAGGCCCCAGTGGCCGTGGTGCTGTGTGCCTCTTCG
AAGAGGATGACGGGAGCTGTGAGGTGAATGGCCGCAGGTACCTGGATGGGGAGACCTTTAAACCCAATTG
CAGGGTTTTGTGCCGCTGTGATGACGGTGGTTTCACCTGCCTGCCGCTGTGCAGTGAGGATGTGCGGCTG
CCCAGCTGGGACTGCCCACGCCCCAGGAGAATACAGGTGCCAGGAAGGTGCTGCCCCGAGTGGGTGTGTG
ACCAGGCAGTGATGCAGCCGGCAATCCAGCCCTCCTCAGCCCAAGGACACCAACTTTCTGCCCTTGTCAC
TCCTGCATCTGCCGATGGCCCCTGTCCAAACTGGAGCACAGCCTGGGGCCCCTGCTCAACCACCTGTGGG
TTGGGCATAGCCACCCGAGTATCCAACCAGAACCGATTCTGCCAACTGGAGATCCAGCGTCGCCTGTGTC
TGTCCAGACCCTGCCTGGCATCCAGGAGCCACGGCTCATGGAACAGTGCCTTCTAG

Translation (251 aa):
MRGNPLIHLLAISFLCILSMVYAQLCPAPCACPWTPPQCPPGVPLVLDGCGCCRVCARRLGESCDHLHVC
DPSQGLVCQPGAGPSGRGAVCLFEEDDGSCEVNGRRYLDGETFKPNCRVLCRCDDGGFTCLPLCSEDVRL
PSWDCPRPRRIQVPGRCCPEWVCDQAVMQPAIQPSSAQGHQLSALVTPASADGPCPNWSTAWGPCSTTCG
LGIATRVSNQNRFCQLEIQRRLCLSRPCLASRSHGSWNSAF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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