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Report for CCDS49717.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49717.1 Public Mus musculus 15 Senp1 23 108 98 CCDS HistoryNCBI Gene:223870Re-query CCDS DB by CCDS ID:49717.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49717.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000044189.15 ENSMUSP00000046598.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000044189.15Link to Ensembl Protein Viewer:ENSMUSP00000046598.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000044189Re-query CCDS DB by Protein ID:ENSMUSP00000046598
Original member Current member NCBI NM_144851.5 NP_659100.1 Accepted alive Link to Nucleotide Sequence:NM_144851.5Link to Protein Sequence:NP_659100.1Re-query CCDS DB by Nucleotide ID:NM_144851Re-query CCDS DB by Protein ID:NP_659100Link to BLAST:NP_659100.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659100.1 640 P59110 640 100% 0 0

Chromosomal Locations for CCDS 49717.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 98042890 98042952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98045303 98045398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98045859 98045943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98047193 98047272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98048186 98048389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98056829 98056960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98058196 98058351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98058904 98058988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98059916 98059954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98064819 98064873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98066404 98066675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98066758 98066861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98075809 98075980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98076550 98076709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98082243 98082327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98084970 98085100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98087086 98087089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1923 nt):
ATGGATGACACAGCTGATGGGGTGAAGATGGACGCTGGGGAGGTGACCTTAGTGAACCACGGCTCCACTT
TCAGAACCCACCGCCCGCCACAGTCAGGCTTTCCAGAGGAGCAGCTTCTGCTTTCTGACCAGCAGAGCTT
GCCTTTCAGGCAGGGTACTTTAGATGGATCTTTCACGTGTTCTACAAGAAGCCCAGCCTATCGTCCAGAT
TATCACTCAGATAACCCTTCCTCAGACAGTTTCCTTGGCTCAGGTGACGTAAGAACCTTTGGTCAAAGTG
CAAATGGACAATGGAGAAATTCCACTCCAGCGTCAGGCTCAGCGCCACAAAAACCAAGAAATAGCCGAAG
TCTTTGCCTCGAAACCCGGAAGACCTCAAGTGGATTATCAAACACCTTTGTGGGCAAGTCCAATCACCAC
TGCCACATGTCTGCGTATGAAAAGTCATTTCCCATTAAGCCTGCCCCAAGTCCATCCTGGAGTGGGTCAT
GTCGTCGGAGTCTTTTAAGCCCTAAGAAAACTCAGAGGCGACATTTCAGCACAGCAGAAGAGACAGTTCA
AGAAGAAGAGAAGGAGATCTACAGACAGCTGCTGCAGATGGTCACAGGGAAGCAGTTCTGTGTAGCGAAA
CCCACCACACATTTTCCGTTACGCCTGTCTCGGTGTCTTAGTTCCAATAAGAACTCTTTGAAAGACTCGC
TGTTGAGAAACGGAAACTCTTGTGCATCTCATGTCATTGGTTCTGATACGTCATCCTCTGGATCTGCCAG
CATTTTAACTGCACAGGAGCAGTTGTCCCACAGTGCACATTCCCTGTCATCTGGTACCCCAGATGTTGCC
TTTGGATCCAAAGACTCTGATCCTCACCATCACCTCGCTGCACCTCATCAGCCAAATAGCTTACCAGCAT
CAAATACACAGTCCGAAGGGTCAGACTCTGTGATTTTACTTAAAGTGAAAGAATCTCAGACTCCAGCTTC
CAGCCCTACGTTCTTCCAGGCAGAGCTATGGATCAAAGAATTAACTAGCGTTTATGACTCTCGAGCTCGG
GAAAGATTGCGCCGGATTGAAGAGCAGAAAGCATTGGCACTACAGCTTCAAAACCAGCGACTGCAGGAGC
AGGAACATGCAGTACTTGACTCCGTAGAGCTTCACCTTCGTGTGCCTCTTGAAAAGGAGATTCCTGTCAC
AGCTGCCCAAGAAACCAGGAAAAAAAGCCACCAGCTGACTGACAGTGAAGACGAATTTCCTGAAATTACA
GAGGAAATGGAAAAAGAAATAAAGAATGTATTTCGTAACGGTAACCAGGATGAAGTCCTCAGTGAGGCAT
TCCGCTTGACCATTACACGCAAAGACATTCAGACTCTAAACCATCTAAACTGGCTCAATGATGAGATCAT
CAATTTCTACATGAACATGCTAATGGAACGCAGTAAAGAGAAGGGGTTTCCAAGTGTACATGCGTTTAAT
ACCTTCTTCTTCACTAAGCTAAAAACAGCTGGTTATCAGGCAGTGAAACGCTGGACAAAGAAGGTGGATG
TATTCTCCGTTGATATTCTTCTGGTGCCCATTCACTTGGGTGTGCACTGGTGTCTAGCTGTTGTAGACTT
TAGAAGGAAGAGTATCACCTACTATGATTCTATGGGTGGAATAAACAACGAGGCCTGCAGGATCCTCTTG
CAATACCTAAAACAAGAAAGTGTTGACAAGAAAAGGAAAGAGTTTGACACCAACGGCTGGCAGCTCTTCA
GCAAGAAGAGCCAGGAAATCCCACAGCAGATGAATGGGAGTGACTGTGGAATGTTTGCTTGCAAATATGC
TGACTGCATTACCAAAGACAGACCAATCAACTTCACACAGCAACACATGCCATATTTCCGAAAGCGAATG
GTCTGGGAGATCCTCCACCGGAAGCTCTTGTGA

Translation (640 aa):
MDDTADGVKMDAGEVTLVNHGSTFRTHRPPQSGFPEEQLLLSDQQSLPFRQGTLDGSFTCSTRSPAYRPD
YHSDNPSSDSFLGSGDVRTFGQSANGQWRNSTPASGSAPQKPRNSRSLCLETRKTSSGLSNTFVGKSNHH
CHMSAYEKSFPIKPAPSPSWSGSCRRSLLSPKKTQRRHFSTAEETVQEEEKEIYRQLLQMVTGKQFCVAK
PTTHFPLRLSRCLSSNKNSLKDSLLRNGNSCASHVIGSDTSSSGSASILTAQEQLSHSAHSLSSGTPDVA
FGSKDSDPHHHLAAPHQPNSLPASNTQSEGSDSVILLKVKESQTPASSPTFFQAELWIKELTSVYDSRAR
ERLRRIEEQKALALQLQNQRLQEQEHAVLDSVELHLRVPLEKEIPVTAAQETRKKSHQLTDSEDEFPEIT
EEMEKEIKNVFRNGNQDEVLSEAFRLTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEKGFPSVHAFN
TFFFTKLKTAGYQAVKRWTKKVDVFSVDILLVPIHLGVHWCLAVVDFRRKSITYYDSMGGINNEACRILL
QYLKQESVDKKRKEFDTNGWQLFSKKSQEIPQQMNGSDCGMFACKYADCITKDRPINFTQQHMPYFRKRM
VWEILHRKLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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